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brentp / smoove

structural variant calling and genotyping with existing tools, but, smoothly.
Apache License 2.0
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Use of smoove in haploid organisms #177

Open pabloangulo7 opened 2 years ago

pabloangulo7 commented 2 years ago

Hello,

I would like to use this tool in an haploid organism. It would be possible? If so, what parameters should I modify?

Thanks

Pablo

brentp commented 2 years ago

I think it should work as well as it can with default parameters.

pabloangulo7 commented 2 years ago

But If there is a duplication in an area, would the tool detect it in the same way in a haploid sample as in a diploid sample? Since the baseline copy number in diploid is 2 and in haploid is 1.