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brentp / smoove

structural variant calling and genotyping with existing tools, but, smoothly.
Apache License 2.0
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bcftools: error while loading shared libraries: libopenblas.so.0: cannot open shared object file: No such file or directory > gsort version 0.1.4 #211

Closed FrancescaMiccolis closed 1 year ago

FrancescaMiccolis commented 1 year ago

Hi, I'm using smoove inside a pipeline written with Nextflow. In order to run smoove I'm using singularity with the https://depot.galaxyproject.org/singularity/smoove/0.2.8--h9ee0642_1 image. While smoove was running it stops showing the error in the title. How can I fix this?

brentp commented 1 year ago

Hi, I'm not sure who maintains that image. Can you try the brentp/smoove docker or bio-conda instead?

FrancescaMiccolis commented 1 year ago

First of all, thanks for answering so quickly. In the meanwhile I run the pipeline using your docker image to run smoove. It takes some hours to know if it will work. I'll fill you later, thanks a lot!