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brentp / smoove

structural variant calling and genotyping with existing tools, but, smoothly.
Apache License 2.0
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sanity checks for sorted and RGs #214

Open hemstrow opened 1 year ago

hemstrow commented 1 year ago

Hey there!

I've noticed some less-than-informative errors when running smoove with bam files not sorted by position files, those without read groups, and particularly with read groups without the SM tag. I don't see anywhere in the documentation that these are required, so figuring. Are sanity checks for these possible?

Thanks!

brentp commented 1 year ago

Hi, I'm happy to accept PRs that improve error messages.