library error in smoove

[poddarharsh15]

Hello, I am facing this error while running smoove on conda environment could you please add some suggestions to solve this issue. Thanks in advance.

[brentp]

Hi, I'm not sure how to help with this exact issue, but there's a problem with your pysam install, you might try re-installing pysam in that environment.

[poddarharsh15]

I tried installing pysam several times and also created a separate environment for pysam but still it gives me the same error.

[brentp]

I would check the pysam issues and/or ask there.

[poddarharsh15]

I am waiting for their answer I did ask there, but at the same time I am trying to find solutions by running on different environment using this command line on terminal. smoove call --outdir ~/HG002_bams/results_smoove/ --exclude ceph18.b37.lumpy.exclude.2014-01-15.bed --name HG002 --fasta home/tigem/h.poddar/short_reads_pipeline/reference_genome/GRCh37/GRCh37.p13.genome.fa -p 1 --genotype /home/tigem/h.poddar/HG002_bams/HG002_dragen.bam Please let me know if I am making some error with the smoove call command.(running on just one sample obtained from HG002 golden standard data) Thanks in advance. After running above command I am getting another panic error could please suggest me some ideas.