does smoove take other sv caller genotypes into account?

brentp / smoove

structural variant calling and genotyping with existing tools, but, smoothly.

Apache License 2.0

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does smoove take other sv caller genotypes into account? #240

Open olivia-gc opened 1 month ago

olivia-gc commented 1 month ago

Hi, I am currently running smoove on manta outputs and wanted to know if smoove genotypes based on lumpy or does it only consider the existing genotyping generated by manta? Thank you!

brentp commented 1 month ago

Hi. No, it does not.