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brentp / smoove

structural variant calling and genotyping with existing tools, but, smoothly.
Apache License 2.0
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how is option '--support' (mininum support required to report a variant) defined? #241

Open yqlan opened 2 weeks ago

yqlan commented 2 weeks ago

how is option '--support' (mininum support required to report a variant) defined? are there differences between '--support' and option '-m' (minimum sample weight for a call), '-mw' (minimum weight across all samples for a call) and '-msw' (minimum per-sample weight for a call) in lumpy?

I think I need to change these parameters for samples with different sequencing depth.