Open olivia-gc opened 5 days ago
hi, smoove paste is a thin wrapper over bcftools merge. I think you'll have to have a look at that variant in all files and make sure the REF alleles match. You could either remove that variant manually, or edit the ref allele.
Hi Brent! I am experiencing the following command error using smoove paste (directly after processing through smoove genotype):
Do you have any ideas on how to solve this error or where it comes from? Thank you!