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brentp / somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MIT License
254 stars 35 forks source link

Symlink as bam/cram input for extraction function #101

Closed JiaweiShen1116 closed 2 years ago

JiaweiShen1116 commented 2 years ago

Hi,

I am wondering if somalier supports symlink as bam/cram input for the extraction function. Thank you very much.

best, Jiawei Shen

brentp commented 2 years ago

I guess you figured this out, but indeed, it should work with symlinks.