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brentp / somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MIT License
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How sex is inferred #124

Open solcos opened 9 months ago

solcos commented 9 months ago

Hello!

I want to use somalier for relatedness and also sex determination. I am wondering how the sex is inferred. I would be glad if you can share with me how it is computed and/or which are the variables and thresholds used to do so.

Thank you!

Arnau

brentp commented 9 months ago

See my response in #125 . If you have other questions let me know. The HTML output is supposed to help you find the male or female samples visually, the inference code should work for high-quality, well-behaved samples, but it's a simple test.