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brentp / somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MIT License
262 stars 35 forks source link

`Argument list too long' on 90k samples running ancestry #135

Closed shukwong closed 4 months ago

shukwong commented 4 months ago

I am trying to run ancestry on close to 90k samples and got the "Argument list too long" error from bash. Is it possible to make somalier read in a file containing the path to the somalier files instead?

shukwong commented 4 months ago

sorry, I found that it has been fixed. thanks!