Missing groups.tsv

[andreabc]

Hello,

Would we expect an empty file or no file at all if there are no pairs of samples above the relatedness threshold?

I'm currently not seeing my "{output_prefix}.groups.tsv" file and wondering if this expected - I've managed to successfully run this (and get all expected output files) on all my other cohorts and this is the one exception

Many thanks

[brentp]

Hi, if no samples appear to be related above 0.125, then no groups file is created: https://github.com/brentp/somalier/blob/master/src/somalierpkg/relate.nim#L144

[andreabc]

great, thanks again!