Some grouped pairs in groups.csv shown as 'unrelated' in .html

[JosephMcCarter]

In a cohort of 500 samples, some samples pairs were marked as unrelated despite being grouped in the grouped.csv file.

for example

grep 133675 somalier_groups_impact_independant.csv
I-H-133675-T3-1-D1-1,I-H-133675-N2-1-D1-1,I-H-133675-T4-1-D1-1,I-H-133675-T5-1-D1-1,I-H-133675-T6-1-D1-1,I-H-133675-T7-1-D1-1,I-H-133675-T8-1-D1-1,I-H-133675-T9-1-D1-1,I-H-133675-T10-1-D1-1,I-H-133675-N2-2-D1-1

[brentp]

can you share the html file?

[brentp]

or from the js console, can you show the output of:

input["expected-relatedness"]

[JosephMcCarter]

Here is the .html

p230_somalierrun2.somalier.html.zip

[brentp]

great. thank you. I have fixed this. See attached (I just hand-edited your html and made same fix in somalier). fix.zip

[brentp]

can you verify that HTML looks good to you? I have finished up some other dev and it's getting close to a new release for somalier. thanks again.

[JosephMcCarter]

Thank you!

On Wed, 27 Mar 2019 at 17:54, Brent Pedersen notifications@github.com wrote:

Closed #14 https://github.com/brentp/somalier/issues/14 via 01166c0 https://github.com/brentp/somalier/commit/01166c0db115bff189340eeb7d2d2ef24bb9022a .

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub https://github.com/brentp/somalier/issues/14#event-2234613024, or mute the thread https://github.com/notifications/unsubscribe-auth/AYT0CH8o_ho_TRHyV1XcIyBBxViP38OAks5va-iPgaJpZM4cOwXR .

[JosephMcCarter]

html for this specific issue looks good! - Thank you

however - I just noticed another in #15