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brentp / somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MIT License
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site-selection with BS-Seq in mind #2

Closed brentp closed 5 years ago

brentp commented 5 years ago

if the sites did not include reference C's, then this could be used for BS-Seq data.

currently, the sites file includes 38399 sites and 27978 of them are not C's and 30415 of them are not C to T. So we could just distribute a sites file with no C/T variants.

brentp commented 5 years ago

this is included in the new release here: https://github.com/brentp/somalier/releases/tag/v0.1.0 and the sites file in that release.