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brentp / somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MIT License
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cancer ChIPseq data and whole exome data #3

Closed crazyhottommy closed 5 years ago

crazyhottommy commented 5 years ago

Hi Brent,

Is it possible to match ChIPseq and WES bam from the same patient? The ChIPseq is 37 bp short single end while the WES is 75bp paired-end. Is this problematic? want to have a try with this tool.

Thanks! Tommy

brentp commented 5 years ago

This should just work, but would be interested to hear about any problems you encounter.

crazyhottommy commented 5 years ago

will do and let you know. thanks!