Closed kpalin closed 4 years ago
The sample ids in the pedigree file will need to be the prefixed versions. For all-vs-all somalier relate
the prefixed names just flow through and appear in the pairs.tsv
and samples.tsv
this fell off my radar. is this ready from your end?
Yes. It should be fine.
thank you.
I have thousands of samples from SNP chips, Illumina wgs, Nanopore and what not and sometimes the sample names from different platforms are identical, or the source platform is difficult to identify. This lets user to add e.g. the source platform or source bam/vcf file to the sample name which is stored inside the digest.
(nimble mods for getting somalier compile on my platform)