brentp / somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MIT License
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output % of split reads #6

Open brentp opened 5 years ago

brentp commented 5 years ago

the genotyping step on bams iterates over reads. we can count the number of split reads and total reads and samples with a lot of split reads often have some kind of contamination.