Some options are not included in the original README.md such as the -g group_file function of somalier relate. Including the complete cmd line help message to enable easier searching.
Detail changes:
Include all help messages from somalier subcommands
VCF section was merged into previous section after usage for .bcf
Other changes that can be done:
Currently, the # Usage paragraph appeared twice. Could be merged into one.
somalier ancestry' help message remain as somalier pca. Could be changed to somalier ancestry for consistency.
Some options are not included in the original README.md such as the -g group_file function of somalier relate. Including the complete cmd line help message to enable easier searching.