search

brentp / somalier

fast sample-swap and relatedness checks on BAMs/CRAMs/VCFs/GVCFs... "like damn that is one smart wine guy"
MIT License
254 stars 35 forks source link

Bioconda recipe for somalier #92

Closed tamuanand closed 1 year ago

tamuanand commented 2 years ago

Hi

Thanks for the great tool. Is it possible to have this made available via Bioconda

Thanks in advance

brentp commented 2 years ago

It is possible, but I haven't written a recipe. You could write one using the slivar or mosdepth recipe as a guide.

jfy133 commented 1 year ago

I copied mosdepth and borrowed a tiny bit from sliver and it seems to work!

https://github.com/bioconda/bioconda-recipes/pull/36877

Only limitation is that following the slivar, recipe doesn't support OSX but 🤷‍♀️. At least this way there will be also biocontainers available :)

brentp commented 1 year ago

thanks for doing this James!