Closed ptn24 closed 5 years ago
thanks for the clear report. i'll see if i can get a fix in shortly
Hi, this was an easy fix. If you want you can try the (linux) binary attached here. And vcfanno_dev.gz
I should have a release out before august.
Swift response. Thank you, @brentp!
this is out in new release.
Thank you, @brentp. I verified vcfanno 0.3.2
cheers. thanks for following up and for providing the great test-case.
According to https://github.com/brentp/vcfanno#typecasting-values, it should be possible to typecast fields by adding a
_float
suffix to the field names. However, when using theby_alt
op, the annotated VCF fields do not have the desired type, and the_float
suffixes are not removedOp:
self
Field name: good Field number: bad Field type: floatOp:
by_alt
Field name: bad Field number: good Field type: stringIt would be good if the following was true:
by_alt
[ ] minimal conf and lua files that you are using. See above
[ ] urls or actual files for annotations in conf file.
[ ] minimal query file.
[ ] the command you used to invoke vcfanno See above
[ ] the full error message None