Closed huangk-000 closed 4 years ago
hmm. my vcf parser is expecting a Description= field for FILTER headers.
I'll see if I can relax this for next version, meanwhile, you can get around this by adding ,Description="something"
before the >
in your vcf header.
by my reading of the spec, the FILTER header should have description, so this is a bug in whatever is generating your VCF, not in vcfanno or vcfgo.
Thanks a lot! The issue is gone after I added the description.
Thanks a lot! The issue is gone after I added the description.
Hi,
I caught the below error as I ran the command :
${vcfanno} -base-path ${gemini_data} -lua custom.lua test.conf demo.vcf.gz | bgzip > demo.anno.vcf.gz
The files that I used are attached (Archive.zip). Could you please help take a look? Thanks!
============================================= vcfanno version 0.3.2 [built with go1.12.1]
see: https://github.com/brentp/vcfanno
vcfanno.go:115: found 17 sources from 8 files api.go:796: FILTER error: ##FILTER=. [line: 4]
FILTER error: ##FILTER=. [line: 5]
FILTER error: ##FILTER=. [line: 6]
FILTER error: ##FILTER=. [line: 7]
If you have encountered an error, please include: