working with VCF files containing SNV and CNV both like

[snashraf]

If you have encountered an error, please include:

• [ ] minimal conf and lua files that you are using.
• [ ] urls or actual files for annotations in conf file.
• [ ] minimal query file.
• [ ] the command you used to invoke vcfanno
• [ ] the full error message

I am trying to annotate my SNP vcf file with HGMD's latest version.HGMD HGMD_TEMP.vcf.gz latest version VCF contains both SNP and SV in the same VCF file. I think because of this when I am trying to annotate my VCF file, it's throwing an error? I am wondering if VCFANNO supports such annotation files? Could you please confirm?

[brentp]

what's the error?

[snashraf]

I think this is because of a very larger size of this particular deletion. because Its working for other deletion. Please find the attached error. hgmd_pro_2020.1_hg38_v1.txt

[brentp]

so you're running out of memory. there are checkboxes in the issue template that request the original error and the full command. without this it's hard to diagnose. the error message says that you ran out of memory. you can try to run on a machine with more memory or use fewer threads.