Closed bangbangphil closed 3 years ago
Hi, that's not possible. You'd have to use a downstream script to take the (newly added) filter from the INFO and put it in the FILTER field.
Ah ok, guess I'll do just that. Thanks for the quick reply!
De : Brent Pedersen notifications@github.com Envoyé : 3 novembre 2020 09:00 À : brentp/vcfanno vcfanno@noreply.github.com Cc : Philippe bangbangphil@hotmail.ca; Author author@noreply.github.com Objet : Re: [brentp/vcfanno] Put FILTER in FILTER field, not INFO (#130)
Hi, that's not possible. You'd have to use a downstream script to take the (newly added) filter from the INFO and put it in the FILTER field.
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no problem. I do see the utility of what you are requesting, but I don't want vcfanno to collapse under its own complexity.
Hi,
Is there a way to write to FILTER field column? I know I can get FILTER fields from the input VCF writtten in INFO as a list value, put what I would need is to write a particular FILTER tag from the input VCF into the FILTER column of the output VCF. Is that possible?
thank you for your help,
Philippe