Open raonyguimaraes opened 3 years ago
I see the utility in this. I might accept a PR for this. But you can see how it could get unwieldy to handle everything. If you just allow headers like this, it could be something like:
[[annotation]]
file="/home/raony/dev/pynnotator/pynnotator/tests/ann_sample.100.hg38/vep/vep.output.sorted.vcf.gz"
fields = ["CSQ"]
names = ["vep_csq"]
ops=["first"]
headers=["SnpEffVersion", "SnpEffCmd"]
Hi Brent,
Regarding this, is there anyway of adding a new line to the header of the annotated file where the vcfanno version is specified?
Thank you
@C-Gouveia this is now implemented and in release v0.3.3
Awesome! Thank you
thank you!
Hi Brent,
I am wondering how I could keep certain vcf header values after using vcfanno for example:
SnpEffVersion and ##SnpEffCmd
After using vcfanno to merge this vcf with a VEP(ed) vcf I don't see these fields anymore.
Is there a way to include these headers in the output?
Here is my config.toml