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brentp / vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0973-5
MIT License
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profile blocking #18

Closed brentp closed 7 years ago

brentp commented 8 years ago

There are a lot of moving parts in the parallelism. Would be good to see where things are blocking to know where the bottlenecks are. https://software.intel.com/en-us/blogs/2014/05/10/debugging-performance-issues-in-go-programs

brentp commented 8 years ago

and profile memory use with:

go tool pprof --alloc_objects vcfanno mem.pprof