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brentp / vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0973-5
MIT License
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Compressed VCF/BCF output #66

Closed dancooke closed 7 years ago

dancooke commented 7 years ago

Would it be possible to add compressed VCF/BCF output?

brentp commented 7 years ago

I recommend just piping to bgzip or bcftools.