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brentp / vcfanno

annotate a VCF with other VCFs/BEDs/tabixed files
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-016-0973-5
MIT License
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CNV and SV annotation #84

Closed alphahmed18 closed 6 years ago

alphahmed18 commented 6 years ago

Hi,

Thanks again for the great tool and your appreciated help.

I wonder if you could include an example (config and lua files), on how to annotate CNVs and SVs?

I'd be really useful too to suggest specific databases for CNVs and SVs that work the best with vcfanno?

Regards, Ahmed

brentp commented 6 years ago

vcfanno will work out-of-the-box to annotate SV and CNVs. Do you have a more specific question?