For certain analyses (anything with RAxML, but more specifically rcluster and scluster) we should output subset parameters in the best_schemes.txt file, e.g. including:
base frequencies
relative rate
model parameters
gamma rate parameter (if present, NA if not)
invariant sites parameter (if present, NA if not)
roblanf
commented
9 years ago
For certain analyses (anything with RAxML, but more specifically rcluster and scluster) we should output subset parameters in the best_schemes.txt file, e.g. including:
base frequencies relative rate model parameters gamma rate parameter (if present, NA if not) invariant sites parameter (if present, NA if not)