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brettc / partitionfinder

PartitionFinder discovers optimal partitioning schemes for DNA sequences.
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ERROR: Bad base (Q) at site 15 of sequence 1 Printing error context: 6 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYN Problem reading alignment file #138

Open xiongqian123456789 opened 3 years ago

xiongqian123456789 commented 3 years ago

I am use partifinder2 to cauculate the best partition scheme using amino acid dataset, the err shows Bad base (Q) at site 15 of sequence 1 Printing error context: 6 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYN Problem reading alignment file, but i cant find the problems in my dateset.

AP018696 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYNAILIQGKNQAGQDISVTCEVQQLLGDHCIRAVAMNATDGLMRGMEAFDTGNPLTVPVGPTTLGRIFNVVGQPVDGLEDASHENSLPIHRSAPAFVDLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIQEDNISESKVALVYGQMNEPPGARMRVALTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGGLQERITSTKDGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPWIVGEEHYTCAQNVKETLQRYKELQDIIAILGLDELSEEDRQVVARARKIERFLSQPFFVAEVFTGSPGKYVSLKETIQGFNKILSGDLDDLPEQAFYLVGNLEEVVAKAANL-MSLQVCIMTPDKIFWDEEAEEIILPTNTGQMGVLPKHAPLITALDIGVMSIRQDNSWNSFALMNGFASIQNDKVTILVNSAESKQTIDKNEAEKEFLEAQERVNKTIDEKEKVEAVLAFKRSRARFLVIKD----FGHGFGINTNILETNVINLAVVIAVVVTFVGDAVRELLENRKKKILQNICAADARAQEIQEKMDQAISQLESAKIRANEIREQGLIAAEREKNLCIEQAEEETARLKETRQSAIRLQQQKAIQQISQQIVLLSLKQVRDQLKLKMKSTFHPWVNKVKINKYTSIKKMNPLIAAASVIAAGLSVGLAAVGPGIGQGTAAGYAVEGIARQPEAEGKIRGALLLSFAFMESLTIYGLVVALALLFANPFAS-NLLFDSAEVSVGQHYYWEIGSYSIHGQVLMVSWFVFAIIATISFLANNQLKPIPEGLQNLTEFFTEFIRDLAKTQIGEEDYEKWVPFLGTIFLFIFVSNWSGALIPWHVIEIPNGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFKRYISPAAFLLPINVLEDFTKPLSLSFRLFGNILADELVVAVLVALVPLIVPIPIMLLGLFTSGIQALVFATLAGAYIGEAVEDHH---EPVGIIPRSIIRTLNRFLTQLFQNSNNLVIEEFRISRYQILVSLQSLLSLIFIPLIINFLAKTFILIPLTDYLWNKQQDDIFLNSYLEKEALTELQDFEEVLYFDYFLTPTVILKSQIQKKTLDLANNYNQKSIEALTNFFGDLITFGTLTLVIIVLKPQIIIFKSFLVEFIYSLSDTLKSALLILSTNLLVGFHSPRGWELFLEFFLNRFGFPPNENFIFLFVATFPVLLDTIFKYWIFRYLNKISPSTVATYHAMIEMSKIYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITFTCFLVQVATGFAMTFYYRPTVAEAFASINYLMTEVNFGWLIRSIHRWSASMMVLSMILHVCRVYLTGGFKRPRELTWVTGVTMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVVGTTLVELLRGGVGVGQATLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPLMAVIKKPDLTDPVLRAKLAKGMGHNYYGEPAWPNDLLYMFPVTIFGTFACVIGLAVLDPAAIGEPANPFATPLEILPEWYFYPTFQLLRTVPNKLLGVLLMAAVPAGLITVPFIENINKFQNPFRRPVATTVFLIGTVAAIWLGIGATLPIDISLTLGLFMVEPLLSGIVLGLVPVTISGLLVAAYLQYRRGDSLNFMLTLISYIGLLIGGLIMASIFYLAVVK-IQLIMTISPPEREAKKVKIVVDRDPVETSFEKWAKPGHFSRSLAKGPTTTTWIWNLHADVHDFDAHTSDLEDISRKIFSAHFGQLGVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITTELQLYSTAIGGLVMAAAMFFAGWFHYHKSAPKLEWFQNVESMLNHHLAGLLGLGSLGWAGHQIHVSLPVNKLLDAGVDPQEIPLPHELLLNPSLMAQLYPSFKQGLTPFFTLNWSEYSDFLTFQGGLNPVTGGLWLTDTAHHHLAIAVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHSGLYEILTTSWHAQLAINLALFGSLSIIVAHHMYAMPPYPYLATDYATQLSLFTHHNWIGGFCIVGAGAHAAIFMVRDYNPTNNYNNLLDRMIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTLSALGRPADMFSDTAIQLQPIFAQWIQKTHFLAPNATAPNALAGTSPSWGGDVVAVGGKVAMMPISLGTSDFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKSNLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSIVIFHFSWKMQSDVWGTVNASGISHITGGNFAQSANTINGWLRDFLWAQSAQVIQSYGSALSAYGLIFLGAHFVWAFSLMFLFSGRGYWQELIESILWAHNKLKVAPAIQPRALSITQGRAVGVAHYLLGGIATTWSFFLARIISVGMATTKFPKFSQGLANDPTTRRIWFGIATAHDFESHDGMTEENLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEQWVQNPLNIRPIAHAIWDPHFGQPAVEAFTRGGASGPVNIATSGVYQWWYTIGMRTNQDLYIGSIFLSLAATAFLFAGWLHLQPKFQPGLSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPAARGERVGWDNFLTTLPHPQGLTPFFTGNWAAYAENPDTGNHIFGTASGSGTAILTFLGGFHPQTQSLWLSDMAHHHLAIAVLFIVAGHMYRTNFGIGHSMRQILEAHTPPAGGLGAGHKGLYDTVNNSLHFQLGLALASVGTICSLVAQHMYSLPPYAFLAQDFTTQASLYTHHQYIAGFILCGAFAHGAIFFIRDYDPEANKGNVLARMLEHKEAIISHLSWVTLFLGFHTLGLYVHNDVMQAFGTPEKQILIEPVFAQWIQASHGKTAYGFDLLLSQPNSAAYSAGQSLWLPGWLEAINSNTNTLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYFHWKHLGIWQGNVNQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLIYATGFMFLISWRGYWQELIETLVWAHERTPIAALIRWKDKPVALSIVQARLVGLAHFSAGYVLTYAAFLIASTSSKFGMSHSVKIYETCIGCTQCVRACPTDVLEMVPWDGCKASQIASAPRTEDCVGCKRCETACPTDFLSVRVYLGSETTRSMGLSYMKNFLTYLSTAPVIAFAWISFTAGLLIEVNRFFPDPLVFSFMTAILERREASSLWARFCEWVTSTENRLYVGWFGVIMIPTLLTAISVFIIAFVAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFYPIWEAASVDEWLYNGGPYQLIVCHFFLGVCAYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFIVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSIVDSQGRVLNSWADIINRANLGMEVMHERNAHNFPLDLAMGLPWYRVHTVVLNDPGRLIAVHLMHTALVSGWAGSMAFYELAVFDPSDPVLNPMWRQGMFVLPFMTRLGVTQSWGGWTITGESASNPGIWSYEGVAASHIVLSGLLFFAAIWHWVMWDLELFRDPRSGKPALDLPKIFGIHLFLSGVLCFGFGAFHVTGLFGPGIWVSDPYGLTGSVQPVAPSWGPDGFDPYNPGGVASHHIAAGILGILAGLFHLCVRPPQRLYNGLRMGNIETVLSSSIAAVFWAAFVVAGTMWYGSATTPIELYGPTRYQWDLGFFQQEIDKRVQNSLSEGKSLSQAWAQIPEKLAFYDYIGNNPAKGGLFRTGAMNSGDGIAVGWLGHAVFKDKDGNELFVRRMPTFFETFPVVLLDKDGVVRADVPFRRAESKYSIEQVGVSVTFYGGELDGVSFTNPATVKKYARRAQLGEIFEFDRSTLQSDGVFRSSPRGWFTFGHLSFALLFFFGHIWHGARTIFRDVFAGIDEGIDDQIEFGAFLKLGDTSSRRQSV------------------------------------------------------MNLFEVAHFIPEKPMYEQGLILLPHLATLGYGVGPGGEVVDTFPYFVSGVLHLISSAVLGFGGIYHSLIGPETLEESFPFFAYVWKDKNKMSTILGIHLIILGIGAWLLVWKAMYFGGVYDTWAVGGGDVRVITNPTINPGIIFGYLLKSPFGGDGWIVSVDNMEDIIGGHIWIGTLEIFGGIWHILTKPWAWARRAFVWSGEAYLSYSLAAISLMGFIACCMSWFNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVASSQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINAVNFVSPRSWLACSHFVLGFFFFVAHLWHAGRARAAAAGFEKGIDRDNEPALSMKPLDMTITIGKSEEKRGLFDVMDDWLRRDRFVYVGWSGLLLLPCAYFALGGWLTGITFVTSWYSHGLASSFLEGCNFLTAAVSTPPNSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGSFALIGFMLRQFEIARAVKIRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTIFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNQLLNEGIRAWMAAQDQPHETLVFPEEVLPRGNALMAGTTGERPFSDILTSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPNEYFTEDRQEAPLITDRFNSLEQVKQLSTMSSKKS-TYTYPIFTVRWLSVHALAVPTVFFLGAITAMQFIQR---AAQKDTEN---GMSTALGTLLRPLNSEYGKVAPGWGTTVLMGIFMALFAVFLVIILEIYNSSVILDDVTMSWQTLAKMLTLKIFVYTVVSFFVSLFIFGFLSNDPGRNPSS---MSNTGTTGRIPLWLVGVVVGIAAIGLLAIFFYGSYSGLGSSL---MTFLLAKLPEAYAPFDPIVDVLPIIPVFFLLLAFVWQASVSFRMNKPNPNKQTVELNRTSLYWGLLLIFVLAVLFSSYIFNMEVNVLGLIAVALFILIPTSFLLILYVKTASADEMESPAFFFSIFIGCLLLSITGYSLYVGFGPPSKTLRDPFEEHEDMEALVYTFLLVGTLGIIFFSIFFREPPRIIKMTFIFQLTLFAFVSLSFILVVGVPVIFASPNGWTENKRVVFSGVGIWVLLVFALGVLNSFVIMAPQTETKAGTGFKAGVKDYRLTYYTPDYQVKDTDILAAFRMTPQPGVPAEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPL-GEDDQYIAYIAYPLDLFEEGSVTNLFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFTAEAIYKSQAETGEVKGHYLNATAGTCEEMMERGQFAKDLGVPIIMHDYITGGFTANTSLAHFCRASGLLLHIHRAMHAVIDRQRNHGIHFRVLAKILRMSGGDHLHSGTVVGKLEGEREITLGFVDLMRDDYIEKDRSRGIYFTQDWVSLPGTMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLASEGGDVIRAACKWSPELAAACEVWKEIKFEFDAIDTLMIRPQTILNVADNSGAKKLMCIRILGGSKQSAKIGDIIIGVIKQATPNMPLKKSDKVRAVIVRTSKEIQRNNGTFIRFDDNAAVIINKDDNPRGTRVFGPVARELREKDFTKIVSLAPEVLMLQPKRTKFRRHHRGKMRGKANRGNKIAYGDYGLQALEPGWIKSRQIESGRRVLTRYVRRHGKLWIRIFPDKPVTMRAAESRMGSGKGTPEYWVSVVKPGKVIFEIRGVTTPVAKKALTIAGHKMPIKTQIIK-MTRVKRGFVARKRRKKVLKITKGFRGSSSILFRSANQRKMKALMFSYRDRRKRKSNLRNLWISRINITSRLYGLNYNQFIYKLKQLNIHINRKWLAQLAVRDQKTFYELIKQVKMIDLIKYPVITEKSFRLIEK-NKYTFDVDKRLTKPQIKKILEGLFKINITSVNTHLPPTKKKRLGLKQGYKVRYKRVIITIKPNQKIPIFMGIRFYKPYTSGTRSRSVSDFNEITKVSPEKSLTFWLFRSKGRNNRGVITSRHRGGGHKRLYRLIDFKRKKVGINGKVKTIEYDPNRKARIALLIHDDGSKSYILHPRGLKINQSVLASPLAPISIGNCLPLKFIPLGTEVHNIELKPGSGGKLARSAGCVAQIVAKENNYVTLRLPSGEVRLLSQNCWATIGQVGNVEANNIRIGKAGAMRWLGKRPKVRGIAMNPCDHAHGGGEGRSPIGRKKPVSLWGKPALGVRTRKKSKYSDKVIIKRRKMKVRASVRKMCDKCRLIRRGRKILVICKNPKHKQRQG-MERLKIKYKEVIIPKLVEQLNLKNIHQVPKISKIVINRGLGEAALNSKILDTSLNEISLVAGQRGVLTRSKKAIAAFKLRAKTAVGISVTLRGDRMYAFLDRFISLALPRIRDFQGINPKSFDGLGNYSLGLEEQLMFPEIDYDKIDQIRGMDISIITTAKTDNDAFTLLKEFGMPFKKMAKQI-KVTSKKIKNKLPKGVVHIQSTFNNTIVTIINLKGKVISWSSAGSCGFKGARKSTPFAAKTAAEIAARQSMDQGLKQAKVMVKGAGPGRETAIRGLIDAGLQITLIRDITGIAHNGCRPPKKRRVMPTIQQLVNSARIKITNKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTTGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTFDTAGVKGRLNSRSKFGVKMAKKSLIARQKKREKLVDKYKIKRQNLKIKIKEEKFLDEKINLYNKLQKLPRNSSATRLNNRCLITGRPQGYYRNFGLSRHILREMAHNCLLPGLSKSSWMKKKYNLKKKKKTIIPITIYK----------SNKSFVQGTIDYKNLQLLRQFISFEGKILPRYLTGLTAKEQRKIANAIKTARVAGLLPFINQ------MSRSLKKGPFVAEHLLKKVQQLNKNNEKKVVETWSRSSTIVPIMIGHTIAVHNGREHIPIFITDQMVGHKLGEFAPTRTFKGHIKKDKKLKRMSRRHRAKKRVISPDPYYDSILVHMLVNRIMKDGKKTLSYKIVYQTMELISEKTEQNSLQILEQAIENVKPLVEVKAQRIGGSAYQVPIEVNS-ERGTVLAIQWILSAARNRAGNSSVLKLTNEILDAFAKTGGAIKRRTEVHRMAEANKAFAK---MINDTISDMLTRIRNANLAKHETVNVLNTKTNQRISEILKKQGYIESVKISL--DLIEIKLKYSGN------LKKPCITNLKRLSSPGLRLYSSYKNIPRILNGMGTIIISTSKGLMTDQEARNNKIGGEVLFSIWIKN-FNKIIATGRRKSSIATVELVPGNGRFIINNQSGINYMQDNAYLIMQMQSPLDELKN---------FDIQITVKGGGLVGQANAIKLGISRALCLFQN-YRPSLKLKGFLTRDARVKERKKYGLKKARKAPQFSKRYTIKAHEISSVIRRQIAQYNEDMRVVNVGTVFQVGDGIARIYGLEKAMAGELLDFEDGTVGIALNLESKNVGAVLMGEGLTVQEGSSVVATGKIAQIPVSDQCLGRVLNSLARPIDGKGDIEATETRLIESPAPGIISRRSVHEPLQTGLVAVDAMIPIGRGQRELIIGDRQTGKTSVALDTIINQKGKDVVCVYVAIGQKAASIAQVVNTLEERGCMDYTIIVAATADSPATLQYLAPYTGASLAEYFMYKGRHTLIIYDDLSKQAQAYREMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSDQLGSGSMTALPIVETQEGDVSAYIPTNVISITDGQIFLSGDIFNSGIRPAINVGISVSRVGSAAQPKAMKQVAGKLKLELAQFAELEAFSQFASDLDQATQKQLARGQRLREILKQPQSSPLSLEDQVTTIYAGTNGYLDTLPVNEVRSFLVELRQYLSTNKSKYGEIIRETNTLNEEAEALLKEGLTDLL-SNRMAREKFERSKPHVNIGTIGHVDHGKTTLTAAITMALQKFSGKTGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHLLLAKQVGVPSIVVFLNKEDQVDDPELLELVQLEVQETLEAYEFPSEEVPIVTGSALLALEALIENTEV--SDNKWVNKIYDLMKEVDSYIPTPERETDKTFLMAVEDVFSITGRGTVATGRVERGVLKTNETVDLVGLGDTKNVTVTGLEMFQKTLDETVAGDNVGVLLRGVQKDEIQRGMVIAAPNSIEPHTKFEAQVYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIENFT---------ADDGSETKMVIPGDRVKMVVELIQPIAIEDNMRFAIREGGRTVGAGVVSKILEMNFEIILQLTSLVFIVAAGPLVIVLLSTQTDNGMPRSQKNDNFIDKTFTVVADVLIKILPTSNREKQAFTYYRDGMSAQAEGEYAESLQNYYQALRLEIDPYDRSYILYNIGLIHTSNGKHGRALEYYYQALKRNPSLPQALNNIAIIYHYRAEQATEKYQSDVAKLLYDKAADYWNEAIRLAPTNYLEAQAWLRQRNLMSSNLIRRYVVVGSRRTSNYIWAIICAIGGIDFLLTGLSSYFNLNLHADNIIFFPQGLVMCFYGLLGIVFSCYLGLTILWSVGGGFNIFDKQNGIVRIFRWGFPGKNRRIDLTYPIDEITAIRLELKDGLNPRRTIYLCVKGQRQIPLTRVGQPMTLEEIEVLAAELAQFLQKDLI--

cmayer commented 3 years ago

Dear Xiongqian,

I would guess that you try to analyse an amino acid matrix with a nucleotide model. Indeed the Q is the first symbol that is not in the set of allowed nucleotides and ambiguity codes.

Best Christoph

Am 25.11.2020 um 13:57 schrieb xiongqian123456789 notifications@github.com:

I am use partifinder2 to cauculate the best partition scheme using amino acid dataset, the err shows Bad base (Q) at site 15 of sequence 1 Printing error context: 6 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYN Problem reading alignment file, but i cant find the problems in my dateset.

AP018696 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYNAILIQGKNQAGQDISVTCEVQQLLGDHCIRAVAMNATDGLMRGMEAFDTGNPLTVPVGPTTLGRIFNVVGQPVDGLEDASHENSLPIHRSAPAFVDLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIQEDNISESKVALVYGQMNEPPGARMRVALTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGGLQERITSTKDGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPWIVGEEHYTCAQNVKETLQRYKELQDIIAILGLDELSEEDRQVVARARKIERFLSQPFFVAEVFTGSPGKYVSLKETIQGFNKILSGDLDDLPEQAFYLVGNLEEVVAKAANL-MSLQVCIMTPDKIFWDEEAEEIILPTNTGQMGVLPKHAPLITALDIGVMSIRQDNSWNSFALMNGFASIQNDKVTILVNSAESKQTIDKNEAEKEFLEAQERVNKTIDEKEKVEAVLAFKRSRARFLVIKD----FGHGFGINTNILETNVINLAVVIAVVVTFVGDAVRELLENRKKKILQNICAADARAQEIQEKMDQAISQLESAKIRANEIREQGLIAAEREKNLCIEQAEEETARLKETRQSAIRLQQQKAIQQISQQIVLLSLKQVRDQLKLKMKSTFHPWVNKVKINKYTSIKKMNPLIAAASVIAAGLSVGLAAVGPGIGQGTAAGYAVEGIARQPEAEGKIRGALLLSFAFMESLTIYGLVVALALLFANPFAS-NLLFDSAEVSVGQHYYWEIGSYSIHGQVLMVSWFVFAIIATISFLANNQLKPIPEGLQNLTEFFTEFIRDLAKTQIGEEDYEKWVPFLGTIFLFIFVSNWSGALIPWHVIEIPNGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFKRYISPAAFLLPINVLEDFTKPLSLSFRLFGNILADELVVAVLVALVPLIVPIPIMLLGLFTSGIQALVFATLAGAYIGEAVEDHH---EPVGIIPRSIIRTLNRFLTQLFQNSNNLVIEEFRISRYQILVSLQSLLSLIFIPLIINFLAKTFILIPLTDYLWNKQQDDIFLNSYLEKEALTELQDFEEVLYFDYFLTPTVILKSQIQKKTLDLANNYNQKSIEALTNFFGDLITFGTLTLVIIVLKPQIIIFKSFLVEFIYSLSDTLKSALLILSTNLLVGFHSPRGWELFLEFFLNRFGFPPNENFIFLFVATFPVLLDTIFKYWIFRYLNKISPSTVATYHAMIEMSKIYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITFTCFLVQVATGFAMTFYYRPTVAEAFASINYLMTEVNFGWLIRSIHRWSASMMVLSMILHVCRVYLTGGFKRPRELTWVTGVTMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVVGTTLVELLRGGVGVGQATLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPLMAVIKKPDLTDPVLRAKLAKGMGHNYYGEPAWPNDLLYMFPVTIFGTFACVIGLAVLDPAAIGEPANPFATPLEILPEWYFYPTFQLLRTVPNKLLGVLLMAAVPAGLITVPFIENINKFQNPFRRPVATTVFLIGTVAAIWLGIGATLPIDISLTLGLFMVEPLLSGIVLGLVPVTISGLLVAAYLQYRRGDSLNFMLTLISYIGLLIGGLIMASIFYLAVVK-IQLIMTISPPEREAKKVKIVVDRDPVETSFEKWAKPGHFSRSLAKGPTTTTWIWNLHADVHDFDAHTSDLEDISRKIFSAHFGQLGVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITTELQLYSTAIGGLVMAAAMFFAGWFHYHKSAPKLEWFQNVESMLNHHLAGLLGLGSLGWAGHQIHVSLPVNKLLDAGVDPQEIPLPHELLLNPSLMAQLYPSFKQGLTPFFTLNWSEYSDFLTFQGGLNPVTGGLWLTDTAHHHLAIAVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHSGLYEILTTSWHAQLAINLALFGSLSIIVAHHMYAMPPYPYLATDYATQLSLFTHHNWIGGFCIVGAGAHAAIFMVRDYNPTNNYNNLLDRMIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTLSALGRPADMFSDTAIQLQPIFAQWIQKTHFLAPNATAPNALAGTSPSWGGDVVAVGGKVAMMPISLGTSDFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKSNLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSIVIFHFSWKMQSDVWGTVNASGISHITGGNFAQSANTINGWLRDFLWAQSAQVIQSYGSALSAYGLIFLGAHFVWAFSLMFLFSGRGYWQELIESILWAHNKLKVAPAIQPRALSITQGRAVGVAHYLLGGIATTWSFFLARIISVGMATTKFPKFSQGLANDPTTRRIWFGIATAHDFESHDGMTEENLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEQWVQNPLNIRPIAHAIWDPHFGQPAVEAFTRGGASGPVNIATSGVYQWWYTIGMRTNQDLYIGSIFLSLAATAFLFAGWLHLQPKFQPGLSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPAARGERVGWDNFLTTLPHPQGLTPFFTGNWAAYAENPDTGNHIFGTASGSGTAILTFLGGFHPQTQSLWLSDMAHHHLAIAVLFIVAGHMYRTNFGIGHSMRQILEAHTPPAGGLGAGHKGLYDTVNNSLHFQLGLALASVGTICSLVAQHMYSLPPYAFLAQDFTTQASLYTHHQYIAGFILCGAFAHGAIFFIRDYDPEANKGNVLARMLEHKEAIISHLSWVTLFLGFHTLGLYVHNDVMQAFGTPEKQILIEPVFAQWIQASHGKTAYGFDLLLSQPNSAAYSAGQSLWLPGWLEAINSNTNTLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYFHWKHLGIWQGNVNQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLIYATGFMFLISWRGYWQELIETLVWAHERTPIAALIRWKDKPVALSIVQARLVGLAHFSAGYVLTYAAFLIASTSSKFGMSHSVKIYETCIGCTQCVRACPTDVLEMVPWDGCKASQIASAPRTEDCVGCKRCETACPTDFLSVRVYLGSETTRSMGLSYMKNFLTYLSTAPVIAFAWISFTAGLLIEVNRFFPDPLVFSFMTAILERREASSLWARFCEWVTSTENRLYVGWFGVIMIPTLLTAISVFIIAFVAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFYPIWEAASVDEWLYNGGPYQLIVCHFFLGVCAYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFIVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSIVDSQGRVLNSWADIINRANLGMEVMHERNAHNFPLDLAMGLPWYRVHTVVLNDPGRLIAVHLMHTALVSGWAGSMAFYELAVFDPSDPVLNPMWRQGMFVLPFMTRLGVTQSWGGWTITGESASNPGIWSYEGVAASHIVLSGLLFFAAIWHWVMWDLELFRDPRSGKPALDLPKIFGIHLFLSGVLCFGFGAFHVTGLFGPGIWVSDPYGLTGSVQPVAPSWGPDGFDPYNPGGVASHHIAAGILGILAGLFHLCVRPPQRLYNGLRMGNIETVLSSSIAAVFWAAFVVAGTMWYGSATTPIELYGPTRYQWDLGFFQQEIDKRVQNSLSEGKSLSQAWAQIPEKLAFYDYIGNNPAKGGLFRTGAMNSGDGIAVGWLGHAVFKDKDGNELFVRRMPTFFETFPVVLLDKDGVVRADVPFRRAESKYSIEQVGVSVTFYGGELDGVSFTNPATVKKYARRAQLGEIFEFDRSTLQSDGVFRSSPRGWFTFGHLSFALLFFFGHIWHGARTIFRDVFAGIDEGIDDQIEFGAFLKLGDTSSRRQSV------------------------------------------------------MNLFEVAHFIPEKPMYEQGLILLPHLATLGYGVGPGGEVVDTFPYFVSGVLHLISSAVLGFGGIYHSLIGPETLEESFPFFAYVWKDKNKMSTILGIHLIILGIGAWLLVWKAMYFGGVYDTWAVGGGDVRVITNPTINPGIIFGYLLKSPFGGDGWIVSVDNMEDIIGGHIWIGTLEIFGGIWHILTKPWAWARRAFVWSGEAYLSYSLAAISLMGFIACCMSWFNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVASSQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINAVNFVSPRSWLACSHFVLGFFFFVAHLWHAGRARAAAAGFEKGIDRDNEPALSMKPLDMTITIGKSEEKRGLFDVMDDWLRRDRFVYVGWSGLLLLPCAYFALGGWLTGITFVTSWYSHGLASSFLEGCNFLTAAVSTPPNSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGSFALIGFMLRQFEIARAVKIRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTIFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNQLLNEGIRAWMAAQDQPHETLVFPEEVLPRGNALMAGTTGERPFSDILTSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPNEYFTEDRQEAPLITDRFNSLEQVKQLSTMSSKKS-TYTYPIFTVRWLSVHALAVPTVFFLGAITAMQFIQR---AAQKDTEN---GMSTALGTLLRPLNSEYGKVAPGWGTTVLMGIFMALFAVFLVIILEIYNSSVILDDVTMSWQTLAKMLTLKIFVYTVVSFFVSLFIFGFLSNDPGRNPSS---MSNTGTTGRIPLWLVGVVVGIAAIGLLAIFFYGSYSGLGSSL---MTFLLAKLPEAYAPFDPIVDVLPIIPVFFLLLAFVWQASVSFRMNKPNPNKQTVELNRTSLYWGLLLIFVLAVLFSSYIFNMEVNVLGLIAVALFILIPTSFLLILYVKTASADEMESPAFFFSIFIGCLLLSITGYSLYVGFGPPSKTLRDPFEEHEDMEALVYTFLLVGTLGIIFFSIFFREPPRIIKMTFIFQLTLFAFVSLSFILVVGVPVIFASPNGWTENKRVVFSGVGIWVLLVFALGVLNSFVIMAPQTETKAGTGFKAGVKDYRLTYYTPDYQVKDTDILAAFRMTPQPGVPAEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPL-GEDDQYIAYIAYPLDLFEEGSVTNLFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFTAEAIYKSQAETGEVKGHYLNATAGTCEEMMERGQFAKDLGVPIIMHDYITGGFTANTSLAHFCRASGLLLHIHRAMHAVIDRQRNHGIHFRVLAKILRMSGGDHLHSGTVVGKLEGEREITLGFVDLMRDDYIEKDRSRGIYFTQDWVSLPGTMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLASEGGDVIRAACKWSPELAAACEVWKEIKFEFDAIDTLMIRPQTILNVADNSGAKKLMCIRILGGSKQSAKIGDIIIGVIKQATPNMPLKKSDKVRAVIVRTSKEIQRNNGTFIRFDDNAAVIINKDDNPRGTRVFGPVARELREKDFTKIVSLAPEVLMLQPKRTKFRRHHRGKMRGKANRGNKIAYGDYGLQALEPGWIKSRQIESGRRVLTRYVRRHGKLWIRIFPDKPVTMRAAESRMGSGKGTPEYWVSVVKPGKVIFEIRGVTTPVAKKALTIAGHKMPIKTQIIK-MTRVKRGFVARKRRKKVLKITKGFRGSSSILFRSANQRKMKALMFSYRDRRKRKSNLRNLWISRINITSRLYGLNYNQFIYKLKQLNIHINRKWLAQLAVRDQKTFYELIKQVKMIDLIKYPVITEKSFRLIEK-NKYTFDVDKRLTKPQIKKILEGLFKINITSVNTHLPPTKKKRLGLKQGYKVRYKRVIITIKPNQKIPIFMGIRFYKPYTSGTRSRSVSDFNEITKVSPEKSLTFWLFRSKGRNNRGVITSRHRGGGHKRLYRLIDFKRKKVGINGKVKTIEYDPNRKARIALLIHDDGSKSYILHPRGLKINQSVLASPLAPISIGNCLPLKFIPLGTEVHNIELKPGSGGKLARSAGCVAQIVAKENNYVTLRLPSGEVRLLSQNCWATIGQVGNVEANNIRIGKAGAMRWLGKRPKVRGIAMNPCDHAHGGGEGRSPIGRKKPVSLWGKPALGVRTRKKSKYSDKVIIKRRKMKVRASVRKMCDKCRLIRRGRKILVICKNPKHKQRQG-MERLKIKYKEVIIPKLVEQLNLKNIHQVPKISKIVINRGLGEAALNSKILDTSLNEISLVAGQRGVLTRSKKAIAAFKLRAKTAVGISVTLRGDRMYAFLDRFISLALPRIRDFQGINPKSFDGLGNYSLGLEEQLMFPEIDYDKIDQIRGMDISIITTAKTDNDAFTLLKEFGMPFKKMAKQI-KVTSKKIKNKLPKGVVHIQSTFNNTIVTIINLKGKVISWSSAGSCGFKGARKSTPFAAKTAAEIAARQSMDQGLKQAKVMVKGAGPGRETAIRGLIDAGLQITLIRDITGIAHNGCRPPKKRRVMPTIQQLVNSARIKITNKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTTGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTFDTAGVKGRLNSRSKFGVKMAKKSLIARQKKREKLVDKYKIKRQNLKIKIKEEKFLDEKINLYNKLQKLPRNSSATRLNNRCLITGRPQGYYRNFGLSRHILREMAHNCLLPGLSKSSWMKKKYNLKKKKKTIIPITIYK----------SNKSFVQGTIDYKNLQLLRQFISFEGKILPRYLTGLTAKEQRKIANAIKTARVAGLLPFINQ------MSRSLKKGPFVAEHLLKKVQQLNKNNEKKVVETWSRSSTIVPIMIGHTIAVHNGREHIPIFITDQMVGHKLGEFAPTRTFKGHIKKDKKLKRMSRRHRAKKRVISPDPYYDSILVHMLVNRIMKDGKKTLSYKIVYQTMELISEKTEQNSLQILEQAIENVKPLVEVKAQRIGGSAYQVPIEVNS-ERGTVLAIQWILSAARNRAGNSSVLKLTNEILDAFAKTGGAIKRRTEVHRMAEANKAFAK---MINDTISDMLTRIRNANLAKHETVNVLNTKTNQRISEILKKQGYIESVKISL--DLIEIKLKYSGN------LKKPCITNLKRLSSPGLRLYSSYKNIPRILNGMGTIIISTSKGLMTDQEARNNKIGGEVLFSIWIKN-FNKIIATGRRKSSIATVELVPGNGRFIINNQSGINYMQDNAYLIMQMQSPLDELKN---------FDIQITVKGGGLVGQANAIKLGISRALCLFQN-YRPSLKLKGFLTRDARVKERKKYGLKKARKAPQFSKRYTIKAHEISSVIRRQIAQYNEDMRVVNVGTVFQVGDGIARIYGLEKAMAGELLDFEDGTVGIALNLESKNVGAVLMGEGLTVQEGSSVVATGKIAQIPVSDQCLGRVLNSLARPIDGKGDIEATETRLIESPAPGIISRRSVHEPLQTGLVAVDAMIPIGRGQRELIIGDRQTGKTSVALDTIINQKGKDVVCVYVAIGQKAASIAQVVNTLEERGCMDYTIIVAATADSPATLQYLAPYTGASLAEYFMYKGRHTLIIYDDLSKQAQAYREMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSDQLGSGSMTALPIVETQEGDVSAYIPTNVISITDGQIFLSGDIFNSGIRPAINVGISVSRVGSAAQPKAMKQVAGKLKLELAQFAELEAFSQFASDLDQATQKQLARGQRLREILKQPQSSPLSLEDQVTTIYAGTNGYLDTLPVNEVRSFLVELRQYLSTNKSKYGEIIRETNTLNEEAEALLKEGLTDLL-SNRMAREKFERSKPHVNIGTIGHVDHGKTTLTAAITMALQKFSGKTGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHLLLAKQVGVPSIVVFLNKEDQVDDPELLELVQLEVQETLEAYEFPSEEVPIVTGSALLALEALIENTEV--SDNKWVNKIYDLMKEVDSYIPTPERETDKTFLMAVEDVFSITGRGTVATGRVERGVLKTNETVDLVGLGDTKNVTVTGLEMFQKTLDETVAGDNVGVLLRGVQKDEIQRGMVIAAPNSIEPHTKFEAQVYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIENFT---------ADDGSETKMVIPGDRVKMVVELIQPIAIEDNMRFAIREGGRTVGAGVVSKILEMNFEIILQLTSLVFIVAAGPLVIVLLSTQTDNGMPRSQKNDNFIDKTFTVVADVLIKILPTSNREKQAFTYYRDGMSAQAEGEYAESLQNYYQALRLEIDPYDRSYILYNIGLIHTSNGKHGRALEYYYQALKRNPSLPQALNNIAIIYHYRAEQATEKYQSDVAKLLYDKAADYWNEAIRLAPTNYLEAQAWLRQRNLMSSNLIRRYVVVGSRRTSNYIWAIICAIGGIDFLLTGLSSYFNLNLHADNIIFFPQGLVMCFYGLLGIVFSCYLGLTILWSVGGGFNIFDKQNGIVRIFRWGFPGKNRRIDLTYPIDEITAIRLELKDGLNPRRTIYLCVKGQRQIPLTRVGQPMTLEEIEVLAAELAQFLQKDLI--

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xiongqian123456789 commented 3 years ago

Thank you very much for your responding. And I have checked the manual and found the error.

At 2020-11-25 21:20:23, "Christoph Mayer" notifications@github.com wrote:

Dear Xiongqian,

I would guess that you try to analyse an amino acid matrix with a nucleotide model. Indeed the Q is the first symbol that is not in the set of allowed nucleotides and ambiguity codes.

Best Christoph

Am 25.11.2020 um 13:57 schrieb xiongqian123456789 notifications@github.com:

I am use partifinder2 to cauculate the best partition scheme using amino acid dataset, the err shows Bad base (Q) at site 15 of sequence 1 Printing error context: 6 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYN Problem reading alignment file, but i cant find the problems in my dateset.

AP018696 MYDSYVDDKVGHVTQIIGPVVDIAFSSNKMPNIYNAILIQGKNQAGQDISVTCEVQQLLGDHCIRAVAMNATDGLMRGMEAFDTGNPLTVPVGPTTLGRIFNVVGQPVDGLEDASHENSLPIHRSAPAFVDLDTQLSIFETGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIQEDNISESKVALVYGQMNEPPGARMRVALTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGGLQERITSTKDGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLASKGIYPAVDPLDSTSTMLQPWIVGEEHYTCAQNVKETLQRYKELQDIIAILGLDELSEEDRQVVARARKIERFLSQPFFVAEVFTGSPGKYVSLKETIQGFNKILSGDLDDLPEQAFYLVGNLEEVVAKAANL-MSLQVCIMTPDKIFWDEEAEEIILPTNTGQMGVLPKHAPLITALDIGVMSIRQDNSWNSFALMNGFASIQNDKVTILVNSAESKQTIDKNEAEKEFLEAQERVNKTIDEKEKVEAVLAFKRSRARFLVIKD----FGHGFGINTNILETNVINLAVVIAVVVTFVGDAVRELLENRKKKILQNICAADARAQEIQEKMDQAISQLESAKIRANEIREQGLIAAEREKNLCIEQAEEETARLKETRQSAIRLQQQKAIQQISQQIVLLSLKQVRDQLKLKMKSTFHPWVNKVKINKYTSIKKMNPLIAAASVIAAGLSVGLAAVGPGIGQGTAAGYAVEGIARQPEAEGKIRGALLLSFAFMESLTIYGLVVALALLFANPFAS-NLLFDSAEVSVGQHYYWEIGSYSIHGQVLMVSWFVFAIIATISFLANNQLKPIPEGLQNLTEFFTEFIRDLAKTQIGEEDYEKWVPFLGTIFLFIFVSNWSGALIPWHVIEIPNGELAAPTNDINTTVALALLTSIAYFYAGLSKKGLGYFKRYISPAAFLLPINVLEDFTKPLSLSFRLFGNILADELVVAVLVALVPLIVPIPIMLLGLFTSGIQALVFATLAGAYIGEAVEDHH---EPVGIIPRSIIRTLNRFLTQLFQNSNNLVIEEFRISRYQILVSLQSLLSLIFIPLIINFLAKTFILIPLTDYLWNKQQDDIFLNSYLEKEALTELQDFEEVLYFDYFLTPTVILKSQIQKKTLDLANNYNQKSIEALTNFFGDLITFGTLTLVIIVLKPQIIIFKSFLVEFIYSLSDTLKSALLILSTNLLVGFHSPRGWELFLEFFLNRFGFPPNENFIFLFVATFPVLLDTIFKYWIFRYLNKISPSTVATYHAMIEMSKIYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITFTCFLVQVATGFAMTFYYRPTVAEAFASINYLMTEVNFGWLIRSIHRWSASMMVLSMILHVCRVYLTGGFKRPRELTWVTGVTMAVCTVSFGVTGYSLPWDQVGYWAVKIVTGVPDAIPVVGTTLVELLRGGVGVGQATLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPLMAVIKKPDLTDPVLRAKLAKGMGHNYYGEPAWPNDLLYMFPVTIFGTFACVIGLAVLDPAAIGEPANPFATPLEILPEWYFYPTFQLLRTVPNKLLGVLLMAAVPAGLITVPFIENINKFQNPFRRPVATTVFLIGTVAAIWLGIGATLPIDISLTLGLFMVEPLLSGIVLGLVPVTISGLLVAAYLQYRRGDSLNFMLTLISYIGLLIGGLIMASIFYLAVVK-IQLIMTISPPEREAKKVKIVVDRDPVETSFEKWAKPGHFSRSLAKGPTTTTWIWNLHADVHDFDAHTSDLEDISRKIFSAHFGQLGVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGIQITSGFFQLWRASGITTELQLYSTAIGGLVMAAAMFFAGWFHYHKSAPKLEWFQNVESMLNHHLAGLLGLGSLGWAGHQIHVSLPVNKLLDAGVDPQEIPLPHELLLNPSLMAQLYPSFKQGLTPFFTLNWSEYSDFLTFQGGLNPVTGGLWLTDTAHHHLAIAVLFIVAGHMYRTNWGIGHSMKEILEAHKGPFTGEGHSGLYEILTTSWHAQLAINLALFGSLSIIVAHHMYAMPPYPYLATDYATQLSLFTHHNWIGGFCIVGAGAHAAIFMVRDYNPTNNYNNLLDRMIRHRDAIISHLNWVCIFLGFHSFGLYIHNDTLSALGRPADMFSDTAIQLQPIFAQWIQKTHFLAPNATAPNALAGTSPSWGGDVVAVGGKVAMMPISLGTSDFLVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKSNLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSLSIVIFHFSWKMQSDVWGTVNASGISHITGGNFAQSANTINGWLRDFLWAQSAQVIQSYGSALSAYGLIFLGAHFVWAFSLMFLFSGRGYWQELIESILWAHNKLKVAPAIQPRALSITQGRAVGVAHYLLGGIATTWSFFLARIISVGMATTKFPKFSQGLANDPTTRRIWFGIATAHDFESHDGMTEENLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEQWVQNPLNIRPIAHAIWDPHFGQPAVEAFTRGGASGPVNIATSGVYQWWYTIGMRTNQDLYIGSIFLSLAATAFLFAGWLHLQPKFQPGLSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPAARGERVGWDNFLTTLPHPQGLTPFFTGNWAAYAENPDTGNHIFGTASGSGTAILTFLGGFHPQTQSLWLSDMAHHHLAIAVLFIVAGHMYRTNFGIGHSMRQILEAHTPPAGGLGAGHKGLYDTVNNSLHFQLGLALASVGTICSLVAQHMYSLPPYAFLAQDFTTQASLYTHHQYIAGFILCGAFAHGAIFFIRDYDPEANKGNVLARMLEHKEAIISHLSWVTLFLGFHTLGLYVHNDVMQAFGTPEKQILIEPVFAQWIQASHGKTAYGFDLLLSQPNSAAYSAGQSLWLPGWLEAINSNTNTLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWMLNTIGWVTFYFHWKHLGIWQGNVNQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLIYATGFMFLISWRGYWQELIETLVWAHERTPIAALIRWKDKPVALSIVQARLVGLAHFSAGYVLTYAAFLIASTSSKFGMSHSVKIYETCIGCTQCVRACPTDVLEMVPWDGCKASQIASAPRTEDCVGCKRCETACPTDFLSVRVYLGSETTRSMGLSYMKNFLTYLSTAPVIAFAWISFTAGLLIEVNRFFPDPLVFSFMTAILERREASSLWARFCEWVTSTENRLYVGWFGVIMIPTLLTAISVFIIAFVAAPPVDIDGIREPVSGSLLYGNNIISGAVVPTSNAIGLHFYPIWEAASVDEWLYNGGPYQLIVCHFFLGVCAYMGREWELSFRLGMRPWIAVAYSAPVAAASAVFIVYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSIVDSQGRVLNSWADIINRANLGMEVMHERNAHNFPLDLAMGLPWYRVHTVVLNDPGRLIAVHLMHTALVSGWAGSMAFYELAVFDPSDPVLNPMWRQGMFVLPFMTRLGVTQSWGGWTITGESASNPGIWSYEGVAASHIVLSGLLFFAAIWHWVMWDLELFRDPRSGKPALDLPKIFGIHLFLSGVLCFGFGAFHVTGLFGPGIWVSDPYGLTGSVQPVAPSWGPDGFDPYNPGGVASHHIAAGILGILAGLFHLCVRPPQRLYNGLRMGNIETVLSSSIAAVFWAAFVVAGTMWYGSATTPIELYGPTRYQWDLGFFQQEIDKRVQNSLSEGKSLSQAWAQIPEKLAFYDYIGNNPAKGGLFRTGAMNSGDGIAVGWLGHAVFKDKDGNELFVRRMPTFFETFPVVLLDKDGVVRADVPFRRAESKYSIEQVGVSVTFYGGELDGVSFTNPATVKKYARRAQLGEIFEFDRSTLQSDGVFRSSPRGWFTFGHLSFALLFFFGHIWHGARTIFRDVFAGIDEGIDDQIEFGAFLKLGDTSSRRQSV------------------------------------------------------MNLFEVAHFIPEKPMYEQGLILLPHLATLGYGVGPGGEVVDTFPYFVSGVLHLISSAVLGFGGIYHSLIGPETLEESFPFFAYVWKDKNKMSTILGIHLIILGIGAWLLVWKAMYFGGVYDTWAVGGGDVRVITNPTINPGIIFGYLLKSPFGGDGWIVSVDNMEDIIGGHIWIGTLEIFGGIWHILTKPWAWARRAFVWSGEAYLSYSLAAISLMGFIACCMSWFNNTAYPSEFYGPTGPEASQSQAFTFLVRDQRLGANVASSQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINAVNFVSPRSWLACSHFVLGFFFFVAHLWHAGRARAAAAGFEKGIDRDNEPALSMKPLDMTITIGKSEEKRGLFDVMDDWLRRDRFVYVGWSGLLLLPCAYFALGGWLTGITFVTSWYSHGLASSFLEGCNFLTAAVSTPPNSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGSFALIGFMLRQFEIARAVKIRPYNAIAFSAPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTIFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNQLLNEGIRAWMAAQDQPHETLVFPEEVLPRGNALMAGTTGERPFSDILTSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGTPRPNEYFTEDRQEAPLITDRFNSLEQVKQLSTMSSKKS-TYTYPIFTVRWLSVHALAVPTVFFLGAITAMQFIQR---AAQKDTEN---GMSTALGTLLRPLNSEYGKVAPGWGTTVLMGIFMALFAVFLVIILEIYNSSVILDDVTMSWQTLAKMLTLKIFVYTVVSFFVSLFIFGFLSNDPGRNPSS---MSNTGTTGRIPLWLVGVVVGIAAIGLLAIFFYGSYSGLGSSL---MTFLLAKLPEAYAPFDPIVDVLPIIPVFFLLLAFVWQASVSFRMNKPNPNKQTVELNRTSLYWGLLLIFVLAVLFSSYIFNMEVNVLGLIAVALFILIPTSFLLILYVKTASADEMESPAFFFSIFIGCLLLSITGYSLYVGFGPPSKTLRDPFEEHEDMEALVYTFLLVGTLGIIFFSIFFREPPRIIKMTFIFQLTLFAFVSLSFILVVGVPVIFASPNGWTENKRVVFSGVGIWVLLVFALGVLNSFVIMAPQTETKAGTGFKAGVKDYRLTYYTPDYQVKDTDILAAFRMTPQPGVPAEEAGAAVAAESSTGTWTTVWTDGLTSLDRYKGRCYDIEPL-GEDDQYIAYIAYPLDLFEEGSVTNLFTSIVGNVFGFKALRALRLEDLRIPPAYVKTFQGPPHGIQVERDKLNKYGRGLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFTAEAIYKSQAETGEVKGHYLNATAGTCEEMMERGQFAKDLGVPIIMHDYITGGFTANTSLAHFCRASGLLLHIHRAMHAVIDRQRNHGIHFRVLAKILRMSGGDHLHSGTVVGKLEGEREITLGFVDLMRDDYIEKDRSRGIYFTQDWVSLPGTMPVASGGIHVWHMPALVEIFGDDACLQFGGGTLGHPWGNAPGAAANRVALEACTQARNEGRDLASEGGDVIRAACKWSPELAAACEVWKEIKFEFDAIDTLMIRPQTILNVADNSGAKKLMCIRILGGSKQSAKIGDIIIGVIKQATPNMPLKKSDKVRAVIVRTSKEIQRNNGTFIRFDDNAAVIINKDDNPRGTRVFGPVARELREKDFTKIVSLAPEVLMLQPKRTKFRRHHRGKMRGKANRGNKIAYGDYGLQALEPGWIKSRQIESGRRVLTRYVRRHGKLWIRIFPDKPVTMRAAESRMGSGKGTPEYWVSVVKPGKVIFEIRGVTTPVAKKALTIAGHKMPIKTQIIK-MTRVKRGFVARKRRKKVLKITKGFRGSSSILFRSANQRKMKALMFSYRDRRKRKSNLRNLWISRINITSRLYGLNYNQFIYKLKQLNIHINRKWLAQLAVRDQKTFYELIKQVKMIDLIKYPVITEKSFRLIEK-NKYTFDVDKRLTKPQIKKILEGLFKINITSVNTHLPPTKKKRLGLKQGYKVRYKRVIITIKPNQKIPIFMGIRFYKPYTSGTRSRSVSDFNEITKVSPEKSLTFWLFRSKGRNNRGVITSRHRGGGHKRLYRLIDFKRKKVGINGKVKTIEYDPNRKARIALLIHDDGSKSYILHPRGLKINQSVLASPLAPISIGNCLPLKFIPLGTEVHNIELKPGSGGKLARSAGCVAQIVAKENNYVTLRLPSGEVRLLSQNCWATIGQVGNVEANNIRIGKAGAMRWLGKRPKVRGIAMNPCDHAHGGGEGRSPIGRKKPVSLWGKPALGVRTRKKSKYSDKVIIKRRKMKVRASVRKMCDKCRLIRRGRKILVICKNPKHKQRQG-MERLKIKYKEVIIPKLVEQLNLKNIHQVPKISKIVINRGLGEAALNSKILDTSLNEISLVAGQRGVLTRSKKAIAAFKLRAKTAVGISVTLRGDRMYAFLDRFISLALPRIRDFQGINPKSFDGLGNYSLGLEEQLMFPEIDYDKIDQIRGMDISIITTAKTDNDAFTLLKEFGMPFKKMAKQI-KVTSKKIKNKLPKGVVHIQSTFNNTIVTIINLKGKVISWSSAGSCGFKGARKSTPFAAKTAAEIAARQSMDQGLKQAKVMVKGAGPGRETAIRGLIDAGLQITLIRDITGIAHNGCRPPKKRRVMPTIQQLVNSARIKITNKTKSPALKSCPQRRGVCTRVYTTTPKKPNSALRKVARVRLTTGFEVTAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTFDTAGVKGRLNSRSKFGVKMAKKSLIARQKKREKLVDKYKIKRQNLKIKIKEEKFLDEKINLYNKLQKLPRNSSATRLNNRCLITGRPQGYYRNFGLSRHILREMAHNCLLPGLSKSSWMKKKYNLKKKKKTIIPITIYK----------SNKSFVQGTIDYKNLQLLRQFISFEGKILPRYLTGLTAKEQRKIANAIKTARVAGLLPFINQ------MSRSLKKGPFVAEHLLKKVQQLNKNNEKKVVETWSRSSTIVPIMIGHTIAVHNGREHIPIFITDQMVGHKLGEFAPTRTFKGHIKKDKKLKRMSRRHRAKKRVISPDPYYDSILVHMLVNRIMKDGKKTLSYKIVYQTMELISEKTEQNSLQILEQAIENVKPLVEVKAQRIGGSAYQVPIEVNS-ERGTVLAIQWILSAARNRAGNSSVLKLTNEILDAFAKTGGAIKRRTEVHRMAEANKAFAK---MINDTISDMLTRIRNANLAKHETVNVLNTKTNQRISEILKKQGYIESVKISL--DLIEIKLKYSGN------LKKPCITNLKRLSSPGLRLYSSYKNIPRILNGMGTIIISTSKGLMTDQEARNNKIGGEVLFSIWIKN-FNKIIATGRRKSSIATVELVPGNGRFIINNQSGINYMQDNAYLIMQMQSPLDELKN---------FDIQITVKGGGLVGQANAIKLGISRALCLFQN-YRPSLKLKGFLTRDARVKERKKYGLKKARKAPQFSKRYTIKAHEISSVIRRQIAQYNEDMRVVNVGTVFQVGDGIARIYGLEKAMAGELLDFEDGTVGIALNLESKNVGAVLMGEGLTVQEGSSVVATGKIAQIPVSDQCLGRVLNSLARPIDGKGDIEATETRLIESPAPGIISRRSVHEPLQTGLVAVDAMIPIGRGQRELIIGDRQTGKTSVALDTIINQKGKDVVCVYVAIGQKAASIAQVVNTLEERGCMDYTIIVAATADSPATLQYLAPYTGASLAEYFMYKGRHTLIIYDDLSKQAQAYREMSLLLRRPPGREAFPGDVFYLHSRLLERAAKLSDQLGSGSMTALPIVETQEGDVSAYIPTNVISITDGQIFLSGDIFNSGIRPAINVGISVSRVGSAAQPKAMKQVAGKLKLELAQFAELEAFSQFASDLDQATQKQLARGQRLREILKQPQSSPLSLEDQVTTIYAGTNGYLDTLPVNEVRSFLVELRQYLSTNKSKYGEIIRETNTLNEEAEALLKEGLTDLL-SNRMAREKFERSKPHVNIGTIGHVDHGKTTLTAAITMALQKFSGKTGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHLLLAKQVGVPSIVVFLNKEDQVDDPELLELVQLEVQETLEAYEFPSEEVPIVTGSALLALEALIENTEV--SDNKWVNKIYDLMKEVDSYIPTPERETDKTFLMAVEDVFSITGRGTVATGRVERGVLKTNETVDLVGLGDTKNVTVTGLEMFQKTLDETVAGDNVGVLLRGVQKDEIQRGMVIAAPNSIEPHTKFEAQVYVLTKEEGGRHTPFFPGYRPQFYVRTTDVTGKIENFT---------ADDGSETKMVIPGDRVKMVVELIQPIAIEDNMRFAIREGGRTVGAGVVSKILEMNFEIILQLTSLVFIVAAGPLVIVLLSTQTDNGMPRSQKNDNFIDKTFTVVADVLIKILPTSNREKQAFTYYRDGMSAQAEGEYAESLQNYYQALRLEIDPYDRSYILYNIGLIHTSNGKHGRALEYYYQALKRNPSLPQALNNIAIIYHYRAEQATEKYQSDVAKLLYDKAADYWNEAIRLAPTNYLEAQAWLRQRNLMSSNLIRRYVVVGSRRTSNYIWAIICAIGGIDFLLTGLSSYFNLNLHADNIIFFPQGLVMCFYGLLGIVFSCYLGLTILWSVGGGFNIFDKQNGIVRIFRWGFPGKNRRIDLTYPIDEITAIRLELKDGLNPRRTIYLCVKGQRQIPLTRVGQPMTLEEIEVLAAELAQFLQKDLI--

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Zoologisches Forschungsmuseum Alexander Koenig

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