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brettc / partitionfinder

PartitionFinder discovers optimal partitioning schemes for DNA sequences.
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Manually check lastest phyml #56

Closed brettc closed 9 years ago

brettc commented 9 years ago

The latest phyml generates some different information scores. Spot check the results using --save-phylofiles, and just double check that we are extracting the likelihoods correctly, and that the models we're specifying are the models we're getting.

roblanf commented 9 years ago

Yo @brettc, is this on the develop branch?

brettc commented 9 years ago

Yep. I fixed all of test failures, but you still might want to spot check phylofiles.

roblanf commented 9 years ago

Done. I manually checked about 20 files from 20 different subsets. In each case we get the lnL scores correctly.

Also checked about 15 of the models, and they were all correct. So, looks good to me.