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brewsci / homebrew-bio

:beer::microscope: Bioinformatics formulae for the Homebrew package manager (macOS and Linux)
http://brewsci.github.io/homebrew-bio
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Warning: Calling depends_on :java is deprecated! #1214

Closed tseemann closed 3 years ago

tseemann commented 3 years ago 
Warning: Calling depends_on :java is deprecated! Use "depends_on "openjdk@11", "depends_on "openjdk@8" or "depends_on "openjdk" instead.
Please report this issue to the brewsci/bio tap (not Homebrew/brew or Homebrew/core), or even better, submit a PR to fix it:

3 packages affected at least:

  /home/linuxbrew/.linuxbrew/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/cluster-picker.rb:16
  /home/linuxbrew/.linuxbrew/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/snpeff.rb:16
  /home/linuxbrew/.linuxbrew/Homebrew/Library/Taps/brewsci/homebrew-bio/Formula/gatk.rb:18
heuermh commented 3 years ago

See also issue #1158 and pull requests #1213, #1160, #1161