Updates - Githubissues

sjackman commented 7 years ago

Subscribe to this issue to receive updates about Brewsci/bio.

tseemann commented 6 years ago

🎉 New formula gblocks in Brewsci/bio for Linux and macOS! ℹ️ Select conserved blocks from multiple alignments 🍺 brew install brewsci/bio/gblocks 🏡 http://molevol.cmima.csic.es/castresana/Gblocks.html 📖 https://doi.org/10.1093/oxfordjournals.molbev.a026334

sjackman commented 5 years ago

🎉 New formula pullseq in Brewsci/bio for Linux and macOS! ℹ️ Utility program for extracting sequences from a fasta/fastq file 🍺 brew install brewsci/bio/pullseq 🏡 https://github.com/bcthomas/pullseq

sjackman commented 5 years ago

🎉 New formula bracken in Brewsci/bio for Linux and macOS! ℹ️ Bayesian estimation species abundances from Kraken output 🍺 brew install brewsci/bio/bracken 🏡 https://ccb.jhu.edu/software/bracken/index.shtml 📖 https://doi.org/10.7717/peerj-cs.104

sjackman commented 5 years ago

🎉 New formula staden-io-lib in Brewsci/bio for Linux and macOS! ℹ️ Staden Package io_lib 🍺 brew install brewsci/bio/staden-io-lib 🏡 https://staden.sourceforge.io/

sjackman commented 5 years ago

🎉 New formula libdivsufsort in Brewsci/bio for Linux and macOS! ℹ️ Lightweight suffix-sorting library 🍺 brew install brewsci/bio/libdivsufsort 🏡 https://github.com/y-256/libdivsufsort

sjackman commented 5 years ago

🎉 New formula das_tool in Brewsci/bio for Linux and macOS! ℹ️ Genomic binning refiner 🍺 brew install brewsci/bio/das_tool 🏡 https://github.com/cmks/DAS_Tool 📖 https://doi.org/10.1038/s41564-018-0171-1

sjackman commented 5 years ago

🎉 New formula abyss-explorer in Brewsci/bio for Linux and macOS! ℹ️ Visualize genome sequence assemblies 🍺 brew install brewsci/bio/abyss-explorer 🏡 https://github.com/bcgsc/ABySS-explorer 📖 https://doi.org/10.1109/TVCG.2009.116

sjackman commented 5 years ago

🎉 New formula ntedit in Brewsci/bio for Linux and macOS! ℹ️ Scalable genome assembly polishing 🍺 brew install brewsci/bio/ntedit 🏡 https://github.com/bcgsc/ntEdit 📖 https://doi.org/10.1101/565374

sjackman commented 5 years ago

🎉 New formula nthits in Brewsci/bio for Linux and macOS! ℹ️ Identifying repeats in high-throughput sequencing data 🍺 brew install brewsci/bio/nthits 🏡 https://github.com/bcgsc/ntHits

sjackman commented 5 years ago

🎉 New formula rails in Brewsci/bio for Linux and macOS! ℹ️ Scaffolding and gap-filling with long sequences: RAILS and Cobbler 🍺 brew install brewsci/bio/rails 🏡 https://github.com/bcgsc/RAILS 📖 https://doi.org/10.21105/joss.00116

sjackman commented 5 years ago

🎉 New formula xmatchview in Brewsci/bio for Linux and macOS! ℹ️ Smith-waterman alignment visualization 🍺 brew install brewsci/bio/xmatchview 🏡 https://github.com/bcgsc/xmatchview 📖 https://doi.org/10.21105/joss.00497

sjackman commented 5 years ago

🎉 New formula libbigwig in Brewsci/bio for Linux and macOS! ℹ️ C library for processing the big UCSC fomats 🍺 brew install brewsci/bio/libbigwig 🏡 https://github.com/dpryan79/libBigWig