How is everyone deciding on the clustering threshold for their data? Right now I am running LSA/kmer_cluster_index.py with the threshold (-t) set to cycle from 0.7 to 0.99 in steps of 0.01 and appending the number of clusters to numClusters.txt to find out what that curve looks like for my data. I'm not sure where to go from there. Any suggestions?
How is everyone deciding on the clustering threshold for their data? Right now I am running LSA/kmer_cluster_index.py with the threshold (-t) set to cycle from 0.7 to 0.99 in steps of 0.01 and appending the number of clusters to numClusters.txt to find out what that curve looks like for my data. I'm not sure where to go from there. Any suggestions?