Open nmb85 opened 8 years ago
I think that "python LSFScripts/create_jobs.py -j LSFScripts/KmerClusterMerge" in line 46 of create_jobs.py:
'body': ["""python LSA/kmer_cluster_index.py -i PROJECT_HOME/hashed_reads/ -o PROJECT_HOME/cluster_vectors/ -t 0.7""","""python LSFScripts/create_jobs.py -j KmerClusterParts -i ./""","""X=`sed -n 1p hashed_reads/hashParts.txt`""","""sed -i 's/%parts%/$X/g' LSFScripts/KmerClusterParts_ArrayJob.q""","""python LSFScripts/create_jobs.py -j LSFScripts/KmerClusterMerge -i ./""","""X=`sed -n 1p cluster_vectors/numClusters.txt`""","""sed -i 's/%clusters%/$X/g' LSFScripts/KmerClusterMerge_ArrayJob.q"""]},
Should be "python LSFScripts/create_jobs.py -j KmerClusterMerge -i ./":
'body': ["""python LSA/kmer_cluster_index.py -i PROJECT_HOME/hashed_reads/ -o PROJECT_HOME/cluster_vectors/ -t 0.7""","""python LSFScripts/create_jobs.py -j KmerClusterParts -i ./""","""X=`sed -n 1p hashed_reads/hashParts.txt`""","""sed -i 's/%parts%/$X/g' LSFScripts/KmerClusterParts_ArrayJob.q""","""python LSFScripts/create_jobs.py -j KmerClusterMerge -i ./""","""X=`sed -n 1p cluster_vectors/numClusters.txt`""","""sed -i 's/%clusters%/$X/g' LSFScripts/KmerClusterMerge_ArrayJob.q"""]},
I think that "python LSFScripts/create_jobs.py -j LSFScripts/KmerClusterMerge" in line 46 of create_jobs.py:
Should be "python LSFScripts/create_jobs.py -j KmerClusterMerge -i ./":