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brian-cleary / LatentStrainAnalysis

Partitioning and analysis methods for large, complex sequence datasets
MIT License
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Problem with MergeHash #18

Open davidvilanova opened 8 years ago

davidvilanova commented 8 years ago

Hi when running the MergeHash function i have this problem....

python LSFScripts/create_jobs.py -j MergeHash -i ./ MergeHash array size will be 0

The steps before went almost well except for the Split function. It seems it is looking for a single file. I have submitted a paired-end expriment , both files names sample_id.MOCK.fastq.1 sample_id.MOCK.fastq.2 but i don´t have singletons.

Any idea ???

Traceback (most recent call last): File "LSFScripts/merge_and_split_pair_files.py", line 80, in rw = split_singletons(sing,out) File "LSFScripts/merge_and_split_pair_files.py", line 33, in split_singletons f1 = open(sing_path) IOError: [Errno 2] No such file or directory: 'MOCK/sample_i d.MOCK.single.fastq.1' Traceback (most recent call last): File "LSFScripts/merge_and_split_pair_files.py", line 80, in rw = split_singletons(sing,out) File "LSFScripts/merge_and_split_pair_files.py", line 33, in split_singletons f1 = open(sing_path) IOError: [Errno 2] No such file or directory: 'MOCK/sample_i d.MOCK.single.fastq.2'

jonoave commented 4 years ago

I'm facing a similar issue. Is there an option to disable the flag for singletons? Is any of the authors still responding to this issue?