Hi when running the MergeHash function i have this problem....
python LSFScripts/create_jobs.py -j MergeHash -i ./
MergeHash array size will be 0
The steps before went almost well except for the Split function. It seems it is looking for a single file. I have submitted a paired-end expriment , both files names sample_id.MOCK.fastq.1 sample_id.MOCK.fastq.2 but i don´t have singletons.
Any idea ???
Traceback (most recent call last):
File "LSFScripts/merge_and_split_pair_files.py", line 80, in
rw = split_singletons(sing,out)
File "LSFScripts/merge_and_split_pair_files.py", line 33, in split_singletons
f1 = open(sing_path)
IOError: [Errno 2] No such file or directory: 'MOCK/sample_i
d.MOCK.single.fastq.1'
Traceback (most recent call last):
File "LSFScripts/merge_and_split_pair_files.py", line 80, in
rw = split_singletons(sing,out)
File "LSFScripts/merge_and_split_pair_files.py", line 33, in split_singletons
f1 = open(sing_path)
IOError: [Errno 2] No such file or directory: 'MOCK/sample_i
d.MOCK.single.fastq.2'
Hi when running the MergeHash function i have this problem....
python LSFScripts/create_jobs.py -j MergeHash -i ./ MergeHash array size will be 0
The steps before went almost well except for the Split function. It seems it is looking for a single file. I have submitted a paired-end expriment , both files names sample_id.MOCK.fastq.1 sample_id.MOCK.fastq.2 but i don´t have singletons.
Any idea ???
Traceback (most recent call last): File "LSFScripts/merge_and_split_pair_files.py", line 80, in
rw = split_singletons(sing,out)
File "LSFScripts/merge_and_split_pair_files.py", line 33, in split_singletons
f1 = open(sing_path)
IOError: [Errno 2] No such file or directory: 'MOCK/sample_i
d.MOCK.single.fastq.1'
Traceback (most recent call last):
File "LSFScripts/merge_and_split_pair_files.py", line 80, in
rw = split_singletons(sing,out)
File "LSFScripts/merge_and_split_pair_files.py", line 33, in split_singletons
f1 = open(sing_path)
IOError: [Errno 2] No such file or directory: 'MOCK/sample_i
d.MOCK.single.fastq.2'