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brian-cleary / LatentStrainAnalysis

Partitioning and analysis methods for large, complex sequence datasets
MIT License
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whether LSA would be useful for separating the reads from host and its symbiotic reads #25

Open JiaoLaboratory opened 4 years ago

JiaoLaboratory commented 4 years ago

Hi, We are assembling a genome of an non model plant organism that it s highly dependent of its symbionts. We have obtained total sequences including symbionts'. Basically I believe I could use a metagenome assembly strategy and try to get both ,but we're not sure how to proceed. whether LSA would be useful to separate the reads from host and its symbiotic reads here?

I would love to know what you think. Thank you for your attention

Kunpeng li