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brian-j-smith / Mamba.jl

Markov chain Monte Carlo (MCMC) for Bayesian analysis in julia
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Cannot find function jl_fill_argnames #158

Open micnngo opened 4 years ago

micnngo commented 4 years ago

Hi, I'm trying to run some example codes to ensure Mamba is properly installed and working.

I tried running the "Rats: A Normal Hierarchical Model" example on your documentation and received the error "ccall: could not find function jl_fill_argnames". I also ran Pkg.test("Mamba") and received the same error.

I'm running Julia v1.2.0 on MacOS 10.13.4. Is v1.2.0 not supported yet?

Could someone please advise? Thank you!

Testing ../doc/tutorial/line.jl

ERROR: LoadError: LoadError: ccall: could not find function jl_fill_argnames Stacktrace: [1] modelexprsrc(::Function, ::Array{Tuple{Symbol,DataType},1}) at /Users/micnngo/.julia/packages/Mamba/674DT/src/utils.jl:18 [2] modelfxsrc(::Array{Tuple{Symbol,DataType},1}, ::Function) at /Users/micnngo/.julia/packages/Mamba/674DT/src/utils.jl:9 [3] Stochastic(::Int64, ::Function, ::Bool) at /Users/micnngo/.julia/packages/Mamba/674DT/src/model/dependent.jl:154 [4] top-level scope at /Users/micnngo/.julia/packages/Mamba/674DT/doc/tutorial/line.jl:6 [5] include at ./boot.jl:328 [inlined] [6] include_relative(::Module, ::String) at ./loading.jl:1094 [7] include(::Module, ::String) at ./Base.jl:31 [8] include(::String) at ./client.jl:431 [9] top-level scope at /Users/micnngo/.julia/packages/Mamba/674DT/test/utils.jl:5 [10] top-level scope at /Users/micnngo/.julia/packages/Mamba/674DT/test/runtests.jl:39 [11] include at ./boot.jl:328 [inlined] [12] include_relative(::Module, ::String) at ./loading.jl:1094 [13] include(::Module, ::String) at ./Base.jl:31 [14] include(::String) at ./client.jl:431 [15] top-level scope at none:5 in expression starting at /Users/micnngo/.julia/packages/Mamba/674DT/doc/tutorial/line.jl:6 in expression starting at /Users/micnngo/.julia/packages/Mamba/674DT/test/runtests.jl:37 ERROR: Package Mamba errored during testing

pmahon3 commented 4 years ago

Having the same issue!

ERROR: LoadError: LoadError: ccall: could not find function jl_fill_argnames Stacktrace: [1] modelexprsrc(::Function, ::Array{Tuple{Symbol,DataType},1}) at C:\Users\Mr Computer.julia\packages\Mamba\674DT\src\utils.jl:18 [2] modelfxsrc(::Array{Tuple{Symbol,DataType},1}, ::Function) at C:\Users\Mr Computer.julia\packages\Mamba\674DT\src\utils.jl:9 [3] Stochastic(::Int64, ::Function, ::Bool) at C:\Users\Mr Computer.julia\packages\Mamba\674DT\src\model\dependent.jl:154 [4] top-level scope at C:\Users\Mr Computer.julia\packages\Mamba\674DT\doc\tutorial\line.jl:6 [5] include at .\boot.jl:328 [inlined] [6] include_relative(::Module, ::String) at .\loading.jl:1094 [7] include(::Module, ::String) at .\Base.jl:31 [8] include(::String) at .\client.jl:431 [9] top-level scope at C:\Users\Mr Computer.julia\packages\Mamba\674DT\test\utils.jl:5 [10] top-level scope at C:\Users\Mr Computer.julia\packages\Mamba\674DT\test\runtests.jl:39 [11] include at .\boot.jl:328 [inlined] [12] include_relative(::Module, ::String) at .\loading.jl:1094 [13] include(::Module, ::String) at .\Base.jl:31 [14] include(::String) at .\client.jl:431 [15] top-level scope at none:5 in expression starting at C:\Users\Mr Computer.julia\packages\Mamba\674DT\doc\tutorial\line.jl:6 in expression starting at C:\Users\Mr Computer.julia\packages\Mamba\674DT\test\runtests.jl:37 ERROR: Package Mamba errored during testing Stacktrace: [1] pkgerror(::String, ::Vararg{String,N} where N) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\Types.jl:112 [2] #test#119(::Bool, ::Nothing, ::typeof(Pkg.Operations.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\Operations.jl:1288 [3] #test at .\none:0 [inlined] [4] #test#62(::Bool, ::Nothing, ::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::Pkg.Types.Context, ::Array{Pkg.Types.PackageSpec,1}) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:245 [5] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:233 [inlined] [6] #test#61 at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:230 [inlined] [7] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:230 [inlined] [8] #test#60 at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:229 [inlined] [9] test at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:229 [inlined] [10] #test#59(::Base.Iterators.Pairs{Union{},Union{},Tuple{},NamedTuple{(),Tuple{}}}, ::typeof(Pkg.API.test), ::String) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:228 [11] test(::String) at C:\cygwin\home\Administrator\buildbot\worker\package_win64\build\usr\share\julia\stdlib\v1.2\Pkg\src\API.jl:228

brian-j-smith commented 4 years ago

I'll look into it tomorrow.

brian-j-smith commented 4 years ago

Thank you for letting me know about the error. I've pushed a commit up to the master branch that should fix it. If you would like to clone the package repo in julia with Pkg.develop and confirm that the fix works for you too, then I will make a new release for the package.

pmahon3 commented 4 years ago

Works great, thank you!