I am trying to run scanorama in R via reticulate, latest version.
I installed scanorama via git cloning, after installing python-annoy from conda. It seems correctly installed, as there is no error when trying to import by both reticulate::import('scanorama') in R and import scanorama in python.
However, when calling integrated.corrected.data <- scanorama$correct(assaylist, genes_list, return_dimred=TRUE, return_dense=TRUE), the following error is raised:
Error in py_get_attr_impl(x, name, silent) : AttributeError: module 'scanorama' has no attribute 'correct'.
Same in python:
AttributeError: module 'scanorama' has no attribute 'correct'
Can you help me figure out what's wrong?
Thank you
Hi,
I am trying to run
scanoramainRviareticulate, latest version. I installedscanoramavia git cloning, after installingpython-annoyfrom conda. It seems correctly installed, as there is no error when trying to import by bothreticulate::import('scanorama')inRandimport scanoramainpython. However, when callingintegrated.corrected.data <- scanorama$correct(assaylist, genes_list, return_dimred=TRUE, return_dense=TRUE), the following error is raised:Error in py_get_attr_impl(x, name, silent) : AttributeError: module 'scanorama' has no attribute 'correct'. Same inpython:AttributeError: module 'scanorama' has no attribute 'correct'Can you help me figure out what's wrong? Thank youC