bridge2ai / b2ai-standards-registry

Bridge2AI Standards Registry data models, API specification, and other documentation.
https://bridge2ai.github.io/b2ai-standards-registry/
MIT License
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Inconsistencies in topics and organizations. #76

Closed mialy-defelice closed 1 year ago

mialy-defelice commented 1 year ago

While trying to parse the standards registry, I noticed some inconsistencies in the topics and orgs referenced in the registry and the associated tools and orgs data.

The table below (and attached csv) indicates the standards that had improperly formatted topics or organizations. Please let me know if you have any questions. FIELD1 Standard Org Topic
0 B2AI_STANDARD:154 B2AI_TOPIC:9, Genome
1 B2AI_STANDARD:155 B2AI_TOPIC:4, Molecular Biology
2 B2AI_STANDARD:225 NHTSA
3 B2AI_STANDARD:249 COMBINE
4 B2AI_STANDARD:280 ISBER
5 B2AI_STANDARD:284 STROBE
6 B2AI_STANDARD:289 COMBINE
7 B2AI_STANDARD:295 CDC
8 B2AI_STANDARD:360 IA
9 B2AI_STANDARD:368 UKDA
10 B2AI_STANDARD:369 RDA
11 B2AI_STANDARD:371 ARDC
12 B2AI_STANDARD:380 SDMX
13 B2AI_STANDARD:386 RI
14 B2AI_STANDARD:396 Model
15 B2AI_STANDARD:398 Model
16 B2AI_STANDARD:399 Model
17 B2AI_STANDARD:400 Model
18 B2AI_STANDARD:401 Model
19 B2AI_STANDARD:402 Model
20 B2AI_STANDARD:403 ASA
21 B2AI_STANDARD:430 obofoundry
22 B2AI_STANDARD:432 FSCAI
23 B2AI_STANDARD:475 Samwald
24 B2AI_STANDARD:526 B2AI_TOPIC:4, Disease
25 B2AI_STANDARD:540 B2AI_TOPIC:1, Environment
26 B2AI_STANDARD:622 AHRQ
27 B2AI_STANDARD:644 Mozilla
28 B2AI_STANDARD:734 Meta
29 B2AI_STANDARD:739 7B
30 B2AI_STANDARD:743 B2AI_TOPIC:12, Networks and Pathways
31 B2AI_STANDARD:789 Netflix
32 B2AI_STANDARD:800 B2AI_TOPIC:26, Proteome
33 B2AI_STANDARD:808 B2AI_ORG:67 NHGRI
34 B2AI_STANDARD:828 Transcript
35 B2AI_STANDARD:828 B2AI_TOPIC:33ome
36 B2AI_STANDARD:836 B2AI_TOPIC:4, Genome

bridge2ai_org_topic_inconsistencies.csv

caufieldjh commented 1 year ago

Thanks - these should be fixed now. The validator really should be catching cases like these organizations, so I'll have to look into that further.

mialy-defelice commented 1 year ago

Thank you so much!