Test BridgeDb 3.0 with downstream projects

[egonw]

• [x] PathVisio
• [x] BridgeDbR
• [x] BridgeDb webservice (used by WikiPathways)
• [x] create metabolite ID mapping database
• [x] create gene/protein ID mapping database

[egonw]

Tests with PathVisio (master) look good: https://github.com/PathVisio/pathvisio/pull/163

[egonw]

See also https://github.com/bridgedb/create-bridgedb-genedb/issues/12

[egonw]

I was able to generate GPMLRDF with it, after patching PathVisio Core and WikiPathways API Client. Hardcoding the dependency on Derby 10.5 is essential.

[egonw]

I'm satisfied.