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bridgedb / BridgeDb

The BridgeDb Library source code
https://bridgedb.org/
Apache License 2.0
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java.lang.RuntimeException on groovysh :grab #169

Open kozo2 opened 3 years ago

kozo2 commented 3 years ago

When I tried to install bridgedb with groovysh :grab, I got the following error.

groovy:000> :grab 'org.bridgedb:org.bridgedb.bio:3.0.1'
ERROR java.lang.RuntimeException:
Error grabbing Grapes -- [unresolved dependency: commonj.sdo#commonj.sdo;2.1.1.v201112051852: not found]
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
        at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
        at org.apache.groovy.groovysh.commands.GrabCommand.grab (GrabCommand.groovy:65)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
        at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
        at org.apache.groovy.groovysh.commands.GrabCommand.execute (GrabCommand.groovy:42)
        at org.apache.groovy.groovysh.Command$execute.call (Unknown Source)
        at org.apache.groovy.groovysh.Command$execute.call (Unknown Source)
        at org.apache.groovy.groovysh.Shell.execute (Shell.groovy:103)
        at org.apache.groovy.groovysh.Groovysh.super$2$execute (Groovysh.groovy)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
        at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
        at org.apache.groovy.groovysh.Groovysh.executeCommand (Groovysh.groovy:308)
        at org.apache.groovy.groovysh.Groovysh.execute (Groovysh.groovy:171)
        at org.apache.groovy.groovysh.Shell.leftShift (Shell.groovy:121)
        at org.apache.groovy.groovysh.Shell$leftShift$0.call (Unknown Source)
        at org.apache.groovy.groovysh.ShellRunner.work (ShellRunner.groovy:93)
        at org.apache.groovy.groovysh.InteractiveShellRunner.super$2$work (InteractiveShellRunner.groovy)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
        at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
        at org.apache.groovy.groovysh.InteractiveShellRunner.work (InteractiveShellRunner.groovy:157)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
        at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
        at org.apache.groovy.groovysh.ShellRunner.run (ShellRunner.groovy:57)
        at org.apache.groovy.groovysh.InteractiveShellRunner.super$2$run (InteractiveShellRunner.groovy)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
        at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
        at org.apache.groovy.groovysh.InteractiveShellRunner.run (InteractiveShellRunner.groovy:116)
        at java_lang_Runnable$run.call (Unknown Source)
        at org.apache.groovy.groovysh.Groovysh.run (Groovysh.groovy:653)
        at org.apache.groovy.groovysh.Groovysh$run$0.callCurrent (Unknown Source)
        at org.apache.groovy.groovysh.Groovysh.run (Groovysh.groovy:618)
        at org.apache.groovy.groovysh.Groovysh$run.call (Unknown Source)
        at org.apache.groovy.groovysh.Main.startGroovysh (Main.groovy:190)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
        at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
        at org.apache.groovy.groovysh.Main.main (Main.groovy:156)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke0 (Native Method)
        at jdk.internal.reflect.NativeMethodAccessorImpl.invoke (NativeMethodAccessorImpl.java:62)
        at jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke (DelegatingMethodAccessorImpl.java:43)
groovy:000>

The environment is

Groovy Shell (3.0.8, JVM: 11.0.12)
Type ':help' or ':h' for help.
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