New HMDb IDs are not recognised

bridgedb / BridgeDb

The BridgeDb Library source code

https://bridgedb.org/

Apache License 2.0

28 stars 21 forks source link

New HMDb IDs are not recognised #91

Closed DeniseSl22 closed 5 years ago

DeniseSl22 commented 5 years ago

GET /{organism}/xrefs/{systemCode}/{identifier} call:

For the bridgedb test webservice, I could convert the old HMDb-IDs to others; however the new IDs all gave N/A as a value. I'm not sure if this is because of old mapping files behind the webservice, or if something else is going on? I used the following IDs: HMDB0000112 HMDB0000295 HMDB0000901 HMDB0000935 HMDB0001275 HMDB0001877 HMDB0013037

Results:

nunogit commented 5 years ago

Can that be related with the database version? This is not the most recent yet.

DeniseSl22 commented 5 years ago

Yeah could be, Where can I check which data is behind the webservice :)?

nunogit commented 5 years ago

@DeniseSl22 You can check ensenbl version in {species}/properties

nunogit commented 5 years ago

Most likely a version problem. The databases I am running are from 2013 (probably the ones used in WikiPathways?). These were the ones sent by Alex. Never thought it would be so different if that's the case. In any case I already discussed with Alex bringing it to the latest version.

nunogit commented 5 years ago

I am closing this issue and reopening one to install the latest version.