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bridgedb / create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata
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No mapping to Wikidata in PV? #11

Closed DeniseSl22 closed 5 years ago

DeniseSl22 commented 5 years ago

When I was working on a Lipid Maps PW, I saw the following mapping in the backpage:

image

One of the LipidMaps IDs (ending with 42) does not exist in Lipid Maps; I found out it originated from Wikidata. It was added at: 

(cur | prev)  15:04, 31 May 2018‎ Reinheitsgebot (talk | contribs)‎ . . (33,079 bytes) +354‎ . . (‎Created claim: LIPID MAPS ID (P2063): LMFA03060042, #quickstatements; invoked by Mix'n'match:Auxiliary sync) (undo) (restore)

I removed this not existing ID from Wikidata, however there is no mentioning of a Wikidata ID in the backpage.... why not? (The double cas number is not on Wikidata, but I have no idea where it is originating from...) @egonw

egonw commented 5 years ago

I cannot see how this did not come from Wikidata... we should test again after the next metabolite mapping database release.

DeniseSl22 commented 5 years ago

I have seen some more of these "glitches" in Pathvisio.... sometimes when you load the data in the backpage again (by first clicking on another DataNode, then going back to the original one), the mappings do appear... bit weird behavior, but I don't think it is related to the mapping files itself. If I see this again, I'll contact Tina.