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bridgedb / create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata
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Weird Mapping HMDB #2

Closed DeniseSl22 closed 5 years ago

DeniseSl22 commented 6 years ago

For this pathway https://www.wikipathways.org/index.php/Pathway:WP134 , has two different compounds in there which map to the same HMDB ID.

Glucose-6-phosphate and fructose-6-phosphate are annotated with 2 different CAS numbers, which seem to match with the name of the node. These both map to http://www.hmdb.ca/metabolites/HMDB01401 .

The mapping to Wikidata is different though, and I cannot find the reason for this incorrect mapping on the HMDb page...

DeniseSl22 commented 5 years ago

Let's revisit this again, when we have the latest metabolite mapping file in place in the webservice.