Add VMHlife Metabolites (Recon)

bridgedb / create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata

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Add VMHlife Metabolites (Recon) #22

Open DeniseSl22 opened 4 years ago

DeniseSl22 commented 4 years ago

[ ] Update BridgeDb libraries (so recon is recognised as a Datasource)
[ ] Try to add example file to bridgeDb correctly
[ ] Write script to query API from VMH life.
[ ] Update Jenkins test with download for VMH life data (release schedule ~ every 3 months).

Chris-Evelo commented 4 years ago

I am not sure I understand this one. I suppose the Recon virtual metabolic human model uses an internal ID scheme that is linked to something external? is it then not enough \for us to connect to that external one?