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bridgedb / create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata
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Add test for not standard inchi's in Wikidata #24

Open DeniseSl22 opened 4 years ago

DeniseSl22 commented 4 years ago

As suggested by Emma, check for not standard Inchi's:

#Find not standard inchi's + corresponding inchikey
SELECT DISTINCT ?item ?inchi ?inchikey
WHERE 
{
  ?item wdt:P234 ?inchi.
  FILTER(STRSTARTS(?inchi, '1/')) . #Not standard inchis start with '1/' (standard with '1s/').
  OPTIONAL {?item wdt:P235 ?inchikey}. #Not standard inchikeys end with NA-X (standard with SA-X).
}
DeniseSl22 commented 4 years ago

24 items as of today: