Extend names.rq for additional chemical roles

bridgedb / create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata

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Extend names.rq for additional chemical roles #33

Open DeniseSl22 opened 3 years ago

DeniseSl22 commented 3 years ago

While working on the DSMN-figures, some WD-IDs didn't have a name connected to them (for which I used the names.rq query). Examples (which we could use to extend the query):

[ ] https://www.wikidata.org/wiki/Q190143 wd:p31 https://www.wikidata.org/wiki/Q55662747 (pair of enationmers)
[ ] Q27104412, Q27108980, Q36461529, Q50362394 (same reason as above)
[ ] Q50980 (xanthine) --> Has "instance of" "chemical compound", but not found with names.rq query (not sure why); same for Q48318 (urea)

DeniseSl22 commented 3 years ago

See https://github.com/bridgedb/create-bridgedb-metabolites/commit/43d5a37900d32fd49f0c2021e0a02d4f0858c4c7 , first testing in developers branch