Check HMDB blacklist item after update

bridgedb / create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata

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Check HMDB blacklist item after update #42

Open DeniseSl22 opened 2 years ago

DeniseSl22 commented 2 years ago

Send entry to HMDB team to check:

Entry HMDB0010337 (named 6-Dehydrotestosterone glucuronide) contains the description of thymine (HMDB0000262), as well as a link to the same ChEBI entry (CHEBI:17821), which is obviously not the same molecule as HMDB0010337. This causes downstream issues in BridgeDb.

DeniseSl22 commented 2 years ago

https://github.com/bridgedb/create-bridgedb-metabolites/commit/255b46e4e6dda123dfb9cb3f70a58f68bd797403