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bridgedb / create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata
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check of 'group of stereoisomers' is included #43

Open egonw opened 1 year ago

egonw commented 1 year ago

Because https://www.wikidata.org/wiki/Q105185517 is reported by Jenkins as missing, so possibly indeed missing from the BridgeDb file.

egonw commented 1 year ago

Looking at the query, I do not see why it should be missing:

PREFIX wdt: <http://www.wikidata.org/prop/direct/>
SELECT ?compound ?id WHERE {
  SERVICE <https://query.wikidata.org/sparql> {
    SELECT DISTINCT ?compound ?id WHERE {
      ?compound wdt:P662 ?id .
    }
  }
}