possible bug in Wikidata<>HMDB mappings

bridgedb / create-bridgedb-metabolites

Create BridgeDb identity mapping files from HMDB, ChEBI, and Wikidata

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possible bug in Wikidata<>HMDB mappings #44

Closed egonw closed 2 months ago

egonw commented 1 year ago

Suspect code:

https://github.com/bridgedb/create-bridgedb-metabolites/blob/master/createDerby.groovy#L664-L666

Problem HMDB identifier: HMDB0240745

Wondering: does this explain some of the duplicate InChIKey code issue?

egonw commented 2 months ago

I found another example of this. The problem seems to be that the code maps HMDB0240745 to HMDB0040745. Similar for HMDB0304256 that gets converted to HMDB0004256.

egonw commented 2 months ago

This was a bug in the code and has been fixed now.