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BridgeDb gene database annotations #4

Closed Chris-Evelo closed 5 years ago

Chris-Evelo commented 6 years ago

The BridgeDb gene databases on https://www.bridgedb.org/mapping-databases/ensembl-gene-mappings/ should also have common names for species.

For other species it links out to the FTP site but I don't see anything there to figure out which species we actually have or what is in which database

DeniseSl22 commented 5 years ago

Okay, I think Jonathan fixed this in the meantime, we now have a Table providing more structured info on the diff. species: image

Is this what you had in mind @Chris-Evelo ? If not, let me know what needs to change!

Chris-Evelo commented 5 years ago

Yes, except I would have a look at the taxon ontology and also provide the English versions of the species names. Mainly to make sure these show up in searches (human, rat, mouse etc), should be in line with the species descriptions we have for the pathways

DeniseSl22 commented 5 years ago

I think this will be handled with the new folder system @nunogit is setting up, so the data is stored with (more) structure. I've now added the common names and the System codes to the table.